Csor.00g087860.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g087860.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	scarecrow-like protein 8
Location	Csor_Chr10: 10266378 .. 10266644 (+)
Sequence length	267
RNA-Seq Expression	Csor.00g087860.m01
Synteny	Csor.00g087860.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCAATCCCCCTTCTCTTAGGTTATCAGGAAGAGAAGGTTGTCATGAAATTGACGGCGGTTGTGGCGGACAACGGTGGAGATGAGAGGTTAAAAAAGGTCGGCGAGTCACAGAGTCAGCTGACAAAAGAACATGATGTCGGGTTCAAATTCAACATGGTGAAAATGGAACTAGCGGAGATGATGTGCGAGTCACTCGGGTGCGATGGAGATGAATCACTAGTAGTGAATTTTGCTTTTAAGTTGTATCAGATGCTGGACTAG

mRNA sequence

ATGAATCCAATCCCCCTTCTCTTAGGTTATCAGGAAGAGAAGGTTGTCATGAAATTGACGGCGGTTGTGGCGGACAACGGTGGAGATGAGAGGTTAAAAAAGGTCGGCGAGTCACAGAGTCAGCTGACAAAAGAACATGATGTCGGGTTCAAATTCAACATGGTGAAAATGGAACTAGCGGAGATGATGTGCGAGTCACTCGGGTGCGATGGAGATGAATCACTAGTAGTGAATTTTGCTTTTAAGTTGTATCAGATGCTGGACTAG

Coding sequence (CDS)

ATGAATCCAATCCCCCTTCTCTTAGGTTATCAGGAAGAGAAGGTTGTCATGAAATTGACGGCGGTTGTGGCGGACAACGGTGGAGATGAGAGGTTAAAAAAGGTCGGCGAGTCACAGAGTCAGCTGACAAAAGAACATGATGTCGGGTTCAAATTCAACATGGTGAAAATGGAACTAGCGGAGATGATGTGCGAGTCACTCGGGTGCGATGGAGATGAATCACTAGTAGTGAATTTTGCTTTTAAGTTGTATCAGATGCTGGACTAG

Protein sequence

MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELAEMMCESLGCDGDESLVVNFAFKLYQMLD

Homology

[Close]

BLAST of Csor.00g087860.m01 vs. ExPASy Swiss-Prot
Match: Q9FYR7 (Scarecrow-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SCL8 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 16  VMKLTAV-------VADNGGDERLKKVGESQSQLTKEHDVGFKFNMV-KMELAEMMCESL 75
           V+K+TAV       + D+GG+ERLK VG+  SQL     +   FN+V  + L ++  ESL
Sbjct: 403 VVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESL 462

Query: 76  GCDGDESLVVNFAFKLYQMLD 89
           GCD DE+L VN AFKLY++ D
Sbjct: 463 GCDPDETLAVNLAFKLYRVPD 483

[Close]

BLAST of Csor.00g087860.m01 vs. ExPASy Swiss-Prot
Match: Q9SDQ3 (Scarecrow-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCL1 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.4e-04
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 32  LKKVGESQSQLTKEHDVGFKFNMVKMELAEMMCESLGCDGDESLVVNFAFKLYQMLD 89
           L+ +G    QL +++ V FKF  +  + + +   +LGC   E+L+VNFAF+L+ M D
Sbjct: 378 LRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPD 434

[Close]

BLAST of Csor.00g087860.m01 vs. NCBI nr
Match: KAG6590426.1 (Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178 bits (451), Expect = 3.00e-56
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
          MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA
Sbjct: 1  MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60

Query: 61 EMMCESLGCDGDESLVVNFAFKLYQMLD 88
          EMMCESLGCDGDESLVVNFAFKLYQMLD
Sbjct: 61 EMMCESLGCDGDESLVVNFAFKLYQMLD 88

[Close]

BLAST of Csor.00g087860.m01 vs. NCBI nr
Match: KAG6590435.1 (Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168 bits (425), Expect = 1.71e-51
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1   MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
           MN IPLLLG+QEEKVVMKLTAVVADNGGDERLKKVGES SQL KEHDVGFKFNMVKMELA
Sbjct: 59  MNLIPLLLGHQEEKVVMKLTAVVADNGGDERLKKVGESPSQLAKEHDVGFKFNMVKMELA 118

Query: 61  EMMCESLGCDGDESLVVNFAFKLYQMLD 88
           EMMCESLGCDGDESLVVNFAFKLYQMLD
Sbjct: 119 EMMCESLGCDGDESLVVNFAFKLYQMLD 146

[Close]

BLAST of Csor.00g087860.m01 vs. NCBI nr
Match: KAG6590429.1 (Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164 bits (416), Expect = 4.02e-50
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1   MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
           MN IPLLLG+QEEKVVMKLTAVVADNGGDERLKKVGESQSQL KEHDVGFKFNMVKMELA
Sbjct: 59  MNLIPLLLGHQEEKVVMKLTAVVADNGGDERLKKVGESQSQLAKEHDVGFKFNMVKMELA 118

Query: 61  EMMCESLGCDGDESLVVNFAFKLYQMLD 88
           EMMC+SL CDGDESLVVNF+FKLYQMLD
Sbjct: 119 EMMCKSLRCDGDESLVVNFSFKLYQMLD 146

[Close]

BLAST of Csor.00g087860.m01 vs. NCBI nr
Match: KAG6590434.1 (Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 5.71e-43
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
           MN IPLLLG+QEEKVVMKLTAVVADNGGDERLKKVGESQSQL KEHDVGFKFNMVKMELA
Sbjct: 46  MNLIPLLLGHQEEKVVMKLTAVVADNGGDERLKKVGESQSQLAKEHDVGFKFNMVKMELA 105

Query: 61  EMMCESLGCDGDESLV 76
           EMMCESLGCDGDESLV
Sbjct: 106 EMMCESLGCDGDESLV 121

[Close]

BLAST of Csor.00g087860.m01 vs. NCBI nr
Match: KAG6590427.1 (Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131 bits (329), Expect = 1.22e-36
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
           MN IPLLLG QEEKVVMKLTAVVADNGG ERLKKVG+SQSQL KEHDVG +FNMVKMELA
Sbjct: 93  MNLIPLLLGQQEEKVVMKLTAVVADNGGYERLKKVGKSQSQLVKEHDVGLEFNMVKMELA 152

Query: 61  EMMCESLGCDGDE 73
           EMMCESLGCDGDE
Sbjct: 153 EMMCESLGCDGDE 165

[Close]

BLAST of Csor.00g087860.m01 vs. ExPASy TrEMBL
Match: A0A6J1HE03 (scarecrow-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111462012 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 1.25e-34
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 25  DNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELAEMMCESLGCDGDESLVVNFAFKLY 84
           DNGGDERLKKVGESQSQL KE+DVGFKFNMVKMELAEMMCESLGCDGDESLVVNFAFKLY
Sbjct: 243 DNGGDERLKKVGESQSQLAKEYDVGFKFNMVKMELAEMMCESLGCDGDESLVVNFAFKLY 302

Query: 85  QMLD 88
           QMLD
Sbjct: 303 QMLD 306

[Close]

BLAST of Csor.00g087860.m01 vs. ExPASy TrEMBL
Match: A0A6J1K574 (scarecrow-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111490861 PE=3 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.61e-30
Identity = 66/88 (75.00%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
           MN I LL G Q+ KVV+KLTAVVA+NG DERLK+VGES SQL KE  VGFKFNMVK ELA
Sbjct: 355 MNLIHLLSGRQKGKVVVKLTAVVAENGRDERLKQVGESLSQLAKELGVGFKFNMVKHELA 414

Query: 61  EMMCESLGCDGDESLVVNFAFKLYQMLD 88
            +  ESLGCD DESL VNFAFKLYQM D
Sbjct: 415 ALTRESLGCDADESLAVNFAFKLYQMPD 442

[Close]

BLAST of Csor.00g087860.m01 vs. ExPASy TrEMBL
Match: A0A6J1H2B4 (scarecrow-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111459386 PE=3 SV=1)

HSP 1 Score: 120 bits (301), Expect = 9.33e-30
Identity = 65/88 (73.86%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1   MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
           MN I LL G Q+ KVV+KLTAVVA+NG DERLK VGES SQL KE  VGFKFNMVK E +
Sbjct: 355 MNLIHLLSGRQKGKVVVKLTAVVAENGRDERLKHVGESLSQLAKELGVGFKFNMVKQEPS 414

Query: 61  EMMCESLGCDGDESLVVNFAFKLYQMLD 88
           E+  ESLGCD DESL VNFAFKLYQM D
Sbjct: 415 ELTRESLGCDADESLAVNFAFKLYQMPD 442

[Close]

BLAST of Csor.00g087860.m01 vs. ExPASy TrEMBL
Match: A0A0A0KK19 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140530 PE=3 SV=1)

HSP 1 Score: 107 bits (266), Expect = 5.93e-25
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
           MN I LL G Q+ KV +KLTAVV +NGGDE LK VGES +QL  E  VGF FN+V+ +LA
Sbjct: 351 MNLIHLLSGRQKGKVTVKLTAVVTENGGDESLKLVGESLTQLANELGVGFNFNIVRHKLA 410

Query: 61  EMMCESLGCDGDESLVVNFAFKLYQMLD 88
           E+  ESLGC+ DESL VNFAFKLY+M D
Sbjct: 411 ELTRESLGCELDESLAVNFAFKLYRMPD 438

[Close]

BLAST of Csor.00g087860.m01 vs. ExPASy TrEMBL
Match: A0A5A7TML4 (Scarecrow-like protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00990 PE=3 SV=1)

HSP 1 Score: 105 bits (263), Expect = 1.52e-24
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MNPIPLLLGYQEEKVVMKLTAVVADNGGDERLKKVGESQSQLTKEHDVGFKFNMVKMELA 60
           MN I LL G Q+ KV +KLTAVV +NGGDE LK VGES +QL  E  VGF FN+V+ +L+
Sbjct: 351 MNLIHLLSGRQKGKVTVKLTAVVTENGGDESLKLVGESLTQLANELGVGFNFNIVRHKLS 410

Query: 61  EMMCESLGCDGDESLVVNFAFKLYQMLD 88
           E+  ESLGC+ DESL VNFAFKLY+M D
Sbjct: 411 ELTRESLGCELDESLAVNFAFKLYRMPD 438

[Close]

BLAST of Csor.00g087860.m01 vs. TAIR 10
Match: AT5G52510.1 (SCARECROW-like 8 )

HSP 1 Score: 67.0 bits (162), Expect = 8.6e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 16  VMKLTAV-------VADNGGDERLKKVGESQSQLTKEHDVGFKFNMV-KMELAEMMCESL 75
           V+K+TAV       + D+GG+ERLK VG+  SQL     +   FN+V  + L ++  ESL
Sbjct: 403 VVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESL 462

Query: 76  GCDGDESLVVNFAFKLYQMLD 89
           GCD DE+L VN AFKLY++ D
Sbjct: 463 GCDPDETLAVNLAFKLYRVPD 483

[Close]

BLAST of Csor.00g087860.m01 vs. TAIR 10
Match: AT1G21450.1 (SCARECROW-like 1 )

HSP 1 Score: 44.3 bits (103), Expect = 6.0e-05
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 32  LKKVGESQSQLTKEHDVGFKFNMVKMELAEMMCESLGCDGDESLVVNFAFKLYQMLD 89
           L+ +G    QL +++ V FKF  +  + + +   +LGC   E+L+VNFAF+L+ M D
Sbjct: 378 LRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPD 434

The following BLAST results are available for this feature:

BLAST of Csor.00g087860.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYR7	1.2e-10	46.91	Scarecrow-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SCL8 PE=2 SV=1	[more]
Q9SDQ3	8.4e-04	36.84	Scarecrow-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCL1 PE=2 SV=1	[more]

BLAST of Csor.00g087860.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590426.1	3.00e-56	100.00	Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6590435.1	1.71e-51	95.45	Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6590429.1	4.02e-50	93.18	Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6590434.1	5.71e-43	96.05	Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6590427.1	1.22e-36	90.41	Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Csor.00g087860.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HE03	1.25e-34	96.88	scarecrow-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111462012 PE=4 SV=1	[more]
A0A6J1K574	2.61e-30	75.00	scarecrow-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111490861 PE=3 SV=1	[more]
A0A6J1H2B4	9.33e-30	73.86	scarecrow-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111459386 PE=3 SV=1	[more]
A0A0A0KK19	5.93e-25	64.77	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140530 PE=3 S...	[more]
A0A5A7TML4	1.52e-24	63.64	Scarecrow-like protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Csor.00g087860.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52510.1	8.6e-12	46.91	SCARECROW-like 8	[more]
AT1G21450.1	6.0e-05	36.84	SCARECROW-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 14..87 e-value: 7.4E-10 score: 38.3
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 14..86
IPR030013	Scarecrow-like protein 8	PANTHER	PTHR31636:SF221	SCARECROW-LIKE PROTEIN 8	coord: 14..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g087860	Csor.00g087860	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g087860.m01.CDS01	Csor.00g087860.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g087860.m01.single01	Csor.00g087860.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g087860.m01.start_codon01	Csor.00g087860.m01.start_codon01	start_codon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g087860.m01.stop_codon01	Csor.00g087860.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g087860.m01	Csor.00g087860.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding