Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAGTAACTCGAACTTCTTTTACGCTTTCAACATTCTCGTCTCTAATTGCCTGCAATCACAATATTTTCCAGTTACTGATATTGTTGCTTTGTTGATGTATTTATTTTTTTTCTTTGAGCATCTTGATTGGGGATGCTATCTTTTAATGGCAGAATTTGACTAGTACAACCTTCAATTTCGCCGCAATTTAACTTAGTTTTTTCCTGCATTTTTATCAACTGGCGTTTTTTTTTCATTGCTGGCTTGCTATTCTGTATTGAAGAAATAAACACCTGGTTGTGCTGTTGTTTGTGAACTCAGAATGTAAGTTTTTGTGACTTCCATGATTAGGGAATAGAAATGTTCTTCATTTAATTTTGACACAAAGGCGCAAAAGTTGAACTTCTAGTGATTCTCATTGCTGCTTCTTTTGCTTCATTCAATCAGCATTCAATTTCATTTATGTGGTACATACATGTGAACTTGTATTGAACTGACTTTGTTTAAATTGTACTTCGCGTGTAGATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCTATGATTCTCACAGTATTGCCATTAGGAAAACAACACATTTAGAATAGAAGTTGTCCATGCTTTTCTGATAGTTTGGTTATCACTTCAGAGGGAAAGGTGGTAAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAGTATGTTTTGTGCATTGTACTTGAGAATTCATACCTTTCCCTTTGCTGTACATATGAGAAGGAAGTTCTTGATATCTTGTTCTGACTGTATTATGCATTGATTTTGACATAGAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGGTTAGATTTTTTCCCTTTAATCACGTTTATTCTGTATCATTGAAGTGGAAAGTTATTCTTGGAGTTTTCATTCAATTAATTGGGGCCGGAACATCAACCTCATATTTATTGATGTTTGCTGATTCTTGTTGTTCTGCTTCAGTAATCTTAATATCTTGATGTTAAAAGAAGTGACTTAATTCATCATTTACAGTTTTGATGAGGGAATACTTCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGTGAGATAATACTACATTCTGTGAGGTTTTAAGCTATAATCCCCAAATCTACTATTTTAATTTTTTTCGCCAAATTCTGTAGGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAAAGGCAAAAAACTACCAGATTATCTTGAAGAATGCTAATTCTCATATAACATAGATCGTCTACATATCAGGTAACTTTTCCTACTCCCTCATTAGGATGGCTAATTTCTTGCTCTCACTCAATTCATGCCTAAAATCTTCATTACCCAGAAATTTTGCTGGAAAGTAGACTTGAATTCAATTGTTTTCCTAGTGTAAGAAATGCTTGGGAGAAGCACCTTGCCCTTGGGAATATCACCTCAACTTTGATAATGACTTAACTTTATATATCAGGGTGTGGACAAATGCAGCTACCCATTTTTGCAACTGTTAAGAAGAGATAGCCCAAATGCATATATTATGAGGTTAGGGCCAATATACATGGTTAGTGAATTATGCTTTACAGCCCAATCTGGAAGGTGA
mRNA sequence
ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTAAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGTTTTGATGAGGGAATACTTCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAATCGTCTACATATCAGGGTGTGGACAAATGCAGCTACCCATTTTTGCAACTGTTAAGAAGAGATAGCCCAAATGCATATATTATGAGGTTAGGGCCAATATACATGGTTAGTGAATTATGCTTTACAGCCCAATCTGGAAGGTGA
Coding sequence (CDS)
ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTAAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGTTTTGATGAGGGAATACTTCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAATCGTCTACATATCAGGGTGTGGACAAATGCAGCTACCCATTTTTGCAACTGTTAAGAAGAGATAGCCCAAATGCATATATTATGAGGTTAGGGCCAATATACATGGTTAGTGAATTATGCTTTACAGCCCAATCTGGAAGGTGA
Protein sequence
MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATDINALILNDDHQSSTYQGVDKCSYPFLQLLRRDSPNAYIMRLGPIYMVSELCFTAQSGR
Homology
BLAST of Csor.00g082230.m01 vs. ExPASy Swiss-Prot
Match:
O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 9.6e-08
Identity = 43/163 (26.38%), Postives = 83/163 (50.92%), Query Frame = 0
Query: 10 DLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYF 69
DL + + P S AI + +M+L + G++LAY+ + ++KSAK++ P+
Sbjct: 12 DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71
Query: 70 AVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEFKHITRH-G 129
+ ++ +L+FSPK LEGK+ + I +++LG +A I + I ++ I
Sbjct: 72 FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131
Query: 130 EEMLVSRANKHHVIKVGTMIRFLVKSF--DEGILHISGSLVPS 169
EE + N ++++ G + F+V + G+ + G+L S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173
BLAST of Csor.00g082230.m01 vs. NCBI nr
Match:
KAG6591280.1 (hypothetical protein SDJN03_13626, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 503 bits (1295), Expect = 2.19e-179
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSSTYQGVDKCSYPFLQLLRRDSPNAYIMR 240
VEGLATNKSKRKMREDEATDINALILNDDHQSSTYQGVDKCSYPFLQLLRRDSPNAYIMR
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSSTYQGVDKCSYPFLQLLRRDSPNAYIMR 240
Query: 241 LGPIYMVSELCFTAQSGR 258
LGPIYMVSELCFTAQSGR
Sbjct: 241 LGPIYMVSELCFTAQSGR 258
BLAST of Csor.00g082230.m01 vs. NCBI nr
Match:
XP_023535184.1 (uncharacterized protein LOC111796686 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 409 bits (1051), Expect = 9.48e-143
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSST 214
VEGLATNKSKRKMREDEATDINALILNDDHQS T
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKT 214
BLAST of Csor.00g082230.m01 vs. NCBI nr
Match:
KAG7024164.1 (rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 409 bits (1051), Expect = 9.48e-143
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSST 214
VEGLATNKSKRKMREDEATDINALILNDDHQS T
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKT 214
BLAST of Csor.00g082230.m01 vs. NCBI nr
Match:
XP_022936799.1 (uncharacterized protein LOC111443277 [Cucurbita moschata] >XP_022936800.1 uncharacterized protein LOC111443277 [Cucurbita moschata])
HSP 1 Score: 409 bits (1051), Expect = 9.48e-143
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSST 214
VEGLATNKSKRKMREDEATDINALILNDDHQS T
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKT 214
BLAST of Csor.00g082230.m01 vs. NCBI nr
Match:
XP_022974791.1 (uncharacterized protein LOC111473544 [Cucurbita maxima] >XP_022974796.1 uncharacterized protein LOC111473544 [Cucurbita maxima])
HSP 1 Score: 403 bits (1036), Expect = 1.83e-140
Identity = 210/214 (98.13%), Postives = 211/214 (98.60%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDADLVIYLHPAKSNKVSQAIL ELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILHELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDI SEF
Sbjct: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDISSEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KHITRHGEEMLVSRANKHHVIKVGT+IRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTIIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSST 214
VEGLATNKSKRKMREDEATDINALILNDDHQS T
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKT 214
BLAST of Csor.00g082230.m01 vs. ExPASy TrEMBL
Match:
A0A6J1F9B5 (uncharacterized protein LOC111443277 OS=Cucurbita moschata OX=3662 GN=LOC111443277 PE=4 SV=1)
HSP 1 Score: 409 bits (1051), Expect = 4.59e-143
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSST 214
VEGLATNKSKRKMREDEATDINALILNDDHQS T
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKT 214
BLAST of Csor.00g082230.m01 vs. ExPASy TrEMBL
Match:
A0A6J1ICE8 (uncharacterized protein LOC111473544 OS=Cucurbita maxima OX=3661 GN=LOC111473544 PE=4 SV=1)
HSP 1 Score: 403 bits (1036), Expect = 8.85e-141
Identity = 210/214 (98.13%), Postives = 211/214 (98.60%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDADLVIYLHPAKSNKVSQAIL ELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILHELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDI SEF
Sbjct: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDISSEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KHITRHGEEMLVSRANKHHVIKVGT+IRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTIIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSST 214
VEGLATNKSKRKMREDEATDINALILNDDHQS T
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKT 214
BLAST of Csor.00g082230.m01 vs. ExPASy TrEMBL
Match:
A0A6J1IWP0 (uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481277 PE=4 SV=1)
HSP 1 Score: 358 bits (918), Expect = 9.88e-123
Identity = 184/223 (82.51%), Postives = 204/223 (91.48%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDA+LVIY+HP+KS KVSQA+LR+LGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1 MEGLKVSDANLVIYVHPSKSKKVSQAVLRDLGAMLLKFDERFEGVLLAYEANIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KH T+HGEEM VSRA+KHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180
Query: 181 VEGLATNKSKRKMREDE---------ATDINALILNDDHQSST 214
VEG TN+S++KMR+++ ATD+NAL+LN+DHQS T
Sbjct: 181 VEGSVTNRSRKKMRDNDRESLLQDSVATDVNALLLNNDHQSKT 223
BLAST of Csor.00g082230.m01 vs. ExPASy TrEMBL
Match:
A0A6J1FN75 (uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)
HSP 1 Score: 357 bits (915), Expect = 3.26e-122
Identity = 184/223 (82.51%), Postives = 203/223 (91.03%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDA+LVIY+HP+KS KVSQA+LRELGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1 MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KH T+HGEEM VSRANKHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180
Query: 181 VEGLATNKSKRKMREDE---------ATDINALILNDDHQSST 214
VEG T++S++K R+++ ATD+NAL+LN+DHQS T
Sbjct: 181 VEGSVTSRSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKT 223
BLAST of Csor.00g082230.m01 vs. ExPASy TrEMBL
Match:
A0A6J1FPG3 (uncharacterized protein LOC111445794 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)
HSP 1 Score: 352 bits (903), Expect = 2.11e-120
Identity = 184/223 (82.51%), Postives = 202/223 (90.58%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLKVSDA+LVIY+HP+KS KVSQA+LRELGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1 MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61 LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
KH T+HGEEM VSRANKHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180
Query: 181 VEGLATNKSKRKMREDE---------ATDINALILNDDHQSST 214
VEG T +S++K R+++ ATD+NAL+LN+DHQS T
Sbjct: 181 VEGSVT-RSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKT 222
BLAST of Csor.00g082230.m01 vs. TAIR 10
Match:
AT1G75670.1 (DNA-directed RNA polymerases )
HSP 1 Score: 219.9 bits (559), Expect = 2.3e-57
Identity = 105/194 (54.12%), Postives = 148/194 (76.29%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLK+S+A+L+I++HP++S V Q I REL ++L +++E F+GVLLAY+A + K AKI
Sbjct: 1 MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
L+G+HPYF V + +LLLF PKP +EGK+VK+ ESIHVIVLGF++AVITD DIR EF
Sbjct: 61 LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
K+ R GE VSR++K H +K+GTM+R V+SFDE ++HI+GSL+P +TG + LEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180
Query: 181 VEGLATNKSKRKMR 195
E L T++ ++ +
Sbjct: 181 EEALPTDRDHKRRK 194
BLAST of Csor.00g082230.m01 vs. TAIR 10
Match:
AT1G75670.2 (DNA-directed RNA polymerases )
HSP 1 Score: 219.9 bits (559), Expect = 2.3e-57
Identity = 105/194 (54.12%), Postives = 148/194 (76.29%), Query Frame = 0
Query: 1 MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
MEGLK+S+A+L+I++HP++S V Q I REL ++L +++E F+GVLLAY+A + K AKI
Sbjct: 1 MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60
Query: 61 LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
L+G+HPYF V + +LLLF PKP +EGK+VK+ ESIHVIVLGF++AVITD DIR EF
Sbjct: 61 LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120
Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
K+ R GE VSR++K H +K+GTM+R V+SFDE ++HI+GSL+P +TG + LEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180
Query: 181 VEGLATNKSKRKMR 195
E L T++ ++ +
Sbjct: 181 EEALPTDRDHKRRK 194
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O43036 | 9.6e-08 | 26.38 | DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain... | [more] |
Match Name | E-value | Identity | Description | |
KAG6591280.1 | 2.19e-179 | 100.00 | hypothetical protein SDJN03_13626, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023535184.1 | 9.48e-143 | 99.53 | uncharacterized protein LOC111796686 [Cucurbita pepo subsp. pepo] | [more] |
KAG7024164.1 | 9.48e-143 | 99.53 | rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022936799.1 | 9.48e-143 | 99.53 | uncharacterized protein LOC111443277 [Cucurbita moschata] >XP_022936800.1 unchar... | [more] |
XP_022974791.1 | 1.83e-140 | 98.13 | uncharacterized protein LOC111473544 [Cucurbita maxima] >XP_022974796.1 uncharac... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1F9B5 | 4.59e-143 | 99.53 | uncharacterized protein LOC111443277 OS=Cucurbita moschata OX=3662 GN=LOC1114432... | [more] |
A0A6J1ICE8 | 8.85e-141 | 98.13 | uncharacterized protein LOC111473544 OS=Cucurbita maxima OX=3661 GN=LOC111473544... | [more] |
A0A6J1IWP0 | 9.88e-123 | 82.51 | uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A6J1FN75 | 3.26e-122 | 82.51 | uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1FPG3 | 2.11e-120 | 82.51 | uncharacterized protein LOC111445794 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g082230.m01.CDS01 | Csor.00g082230.m01.CDS01 | CDS |
Csor.00g082230.m01.CDS02 | Csor.00g082230.m01.CDS02 | CDS |
Csor.00g082230.m01.CDS03 | Csor.00g082230.m01.CDS03 | CDS |
Csor.00g082230.m01.CDS04 | Csor.00g082230.m01.CDS04 | CDS |
Csor.00g082230.m01.CDS05 | Csor.00g082230.m01.CDS05 | CDS |
Csor.00g082230.m01.CDS06 | Csor.00g082230.m01.CDS06 | CDS |
Csor.00g082230.m01.CDS07 | Csor.00g082230.m01.CDS07 | CDS |
Csor.00g082230.m01.CDS08 | Csor.00g082230.m01.CDS08 | CDS |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g082230.m01.stop_codon01 | Csor.00g082230.m01.stop_codon01 | stop_codon |
The following terminal feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g082230.m01.terminal01 | Csor.00g082230.m01.terminal01 | terminal |
The following intron feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g082230.m01.intron01 | Csor.00g082230.m01.intron01 | intron |
Csor.00g082230.m01.intron02 | Csor.00g082230.m01.intron02 | intron |
Csor.00g082230.m01.intron03 | Csor.00g082230.m01.intron03 | intron |
Csor.00g082230.m01.intron04 | Csor.00g082230.m01.intron04 | intron |
Csor.00g082230.m01.intron05 | Csor.00g082230.m01.intron05 | intron |
Csor.00g082230.m01.intron06 | Csor.00g082230.m01.intron06 | intron |
Csor.00g082230.m01.intron07 | Csor.00g082230.m01.intron07 | intron |
The following internal feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g082230.m01.internal01 | Csor.00g082230.m01.internal01 | internal |
Csor.00g082230.m01.internal02 | Csor.00g082230.m01.internal02 | internal |
Csor.00g082230.m01.internal03 | Csor.00g082230.m01.internal03 | internal |
Csor.00g082230.m01.internal04 | Csor.00g082230.m01.internal04 | internal |
Csor.00g082230.m01.internal05 | Csor.00g082230.m01.internal05 | internal |
Csor.00g082230.m01.internal06 | Csor.00g082230.m01.internal06 | internal |
The following initial feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g082230.m01.initial01 | Csor.00g082230.m01.initial01 | initial |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g082230.m01.start_codon01 | Csor.00g082230.m01.start_codon01 | start_codon |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Csor.00g082230.m01 | Csor.00g082230.m01-protein | polypeptide |