Csor.00g079260.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g079260.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr07: 4934890 .. 4935622 (-)
Sequence length222
RNA-Seq ExpressionCsor.00g079260.m01
SyntenyCsor.00g079260.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTGCTCTCCATCTCTCAGCGTTAGCAGAACTCCGCGGTGCACACATCTGCACCACTCTCTTCAAACTTGGAAGCGCCATTGCCAGAACCTTGCACCTTTTCTCTCCGCCTCTCTCAAGAAACCGCTCGTTTATGCTGAAACGAGCCCAATTGGTCTTGTGGATCACTCCGATTTCAAGGCTTAAGAGGTTCGATTCGTCTTTATCTCATCAGAATCTGGTGATTAACGGAGTTCTTTCGGCAACTGATTCTGTGGATTGTAACTCATAGTACCTCACTTTCTTGGTCAGTCGCGTTTTGGTCTTCAGAGGTTTGCTTCAACTTTTAATGAGCCCCTCAGAATCTGGTTAATCACGGTGTTATTTCGGTAGCTGATTTTGAGATTTGTAGCTCATATTGCCTCATTTTCTACTGAATGGAACTGTTAAATATATATTCTAGTATTATCGGAGATTTTTCGGTTTCTTATATGGTTTACTTCTTTTCTCATGCCGGATTTTGGGGTTTAATTAGTTTCAGGCAACGTTTAATTTATGAGGGTTTTAAAAATTTAGGTCTAGAATGAGCTTAAATGAAATTTAGAGATGTTTTGAGGCATTGATAGTTTTATGGTTGAAGTATTGTTCCATGCCCTTATTTAACTTTTTTTTTTTTTTTTTTTTTATTTAAATAATTCGTCTCAGTGTTTGCTTCTCTGTATTTAGAGCCTTCAAATCTTCGTACATTTGA

mRNA sequence

ATGAACTGCTCTCCATCTCTCAGCGTTAGCAGAACTCCGCGGTGCACACATCTGCACCACTCTCTTCAAACTTGGAAGCGCCATTGCCAGAACCTTGCACCTTTTCTCTCCGCCTCTCTCAAGAAACCGCTCGTTTATGCTGAAACGAGCCCAATTGTACCTCACTTTCTTGGTCAGTCGCGTTTTGGTCTTCAGAGAGCCTTCAAATCTTCGTACATTTGA

Coding sequence (CDS)

ATGAACTGCTCTCCATCTCTCAGCGTTAGCAGAACTCCGCGGTGCACACATCTGCACCACTCTCTTCAAACTTGGAAGCGCCATTGCCAGAACCTTGCACCTTTTCTCTCCGCCTCTCTCAAGAAACCGCTCGTTTATGCTGAAACGAGCCCAATTGTACCTCACTTTCTTGGTCAGTCGCGTTTTGGTCTTCAGAGAGCCTTCAAATCTTCGTACATTTGA

Protein sequence

MNCSPSLSVSRTPRCTHLHHSLQTWKRHCQNLAPFLSASLKKPLVYAETSPIVPHFLGQSRFGLQRAFKSSYI
Homology
[Close]
BLAST of Csor.00g079260.m01 vs. NCBI nr
Match: KAG6595316.1 (hypothetical protein SDJN03_11869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156 bits (395), Expect = 3.61e-48
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MNCSPSLSVSRTPRCTHLHHSLQTWKRHCQNLAPFLSASLKKPLVYAETSPIVPHFLGQS 60
          MNCSPSLSVSRTPRCTHLHHSLQTWKRHCQNLAPFLSASLKKPLVYAETSPIVPHFLGQS
Sbjct: 1  MNCSPSLSVSRTPRCTHLHHSLQTWKRHCQNLAPFLSASLKKPLVYAETSPIVPHFLGQS 60

Query: 61 RFGLQRAFKSSYI 73
          RFGLQRAFKSSYI
Sbjct: 61 RFGLQRAFKSSYI 73

[Close]
BLAST of Csor.00g079260.m01 vs. NCBI nr
Match: KAG7027325.1 (hypothetical protein SDJN02_11337, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (286), Expect = 1.95e-31
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNCSPSLSVSRTPRCTHLHHSLQTWKRHCQNLAPFLSASLKKPLVYAETSPI 52
          MNCSPSLSVSRTPRCTHLHHSLQTWKRHCQNLAPFLSASLKKPLVYAETSPI
Sbjct: 20 MNCSPSLSVSRTPRCTHLHHSLQTWKRHCQNLAPFLSASLKKPLVYAETSPI 71

The following BLAST results are available for this feature:
BLAST of Csor.00g079260.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g079260.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595316.13.61e-48100.00hypothetical protein SDJN03_11869, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7027325.11.95e-31100.00hypothetical protein SDJN02_11337, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g079260.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g079260.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g079260Csor.00g079260gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g079260.m01.CDS01Csor.00g079260.m01.CDS01CDS
Csor.00g079260.m01.CDS02Csor.00g079260.m01.CDS02CDS
Csor.00g079260.m01.CDS03Csor.00g079260.m01.CDS03CDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g079260.m01.stop_codon01Csor.00g079260.m01.stop_codon01stop_codon


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g079260.m01.terminal01Csor.00g079260.m01.terminal01terminal


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g079260.m01.intron01Csor.00g079260.m01.intron01intron
Csor.00g079260.m01.intron02Csor.00g079260.m01.intron02intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g079260.m01.internal01Csor.00g079260.m01.internal01internal


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g079260.m01.initial01Csor.00g079260.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g079260.m01.start_codon01Csor.00g079260.m01.start_codon01start_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g079260.m01Csor.00g079260.m01-proteinpolypeptide