Csor.00g027500.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g027500.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LOB domain-containing protein
Location	Csor_Chr04: 6042094 .. 6042823 (-)
Sequence length	657
RNA-Seq Expression	Csor.00g027500.m01
Synteny	Csor.00g027500.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTGCTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTCCGAACCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTTGTTTTTCGATCCTCTAAACATTTAGACACCTCATGGGTTTTTAAAATGTTTTTAAATCTTTCTGTTGCAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTACCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

mRNA sequence

ATGACTGTGCTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTCCGAACCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTACCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

Coding sequence (CDS)

ATGACTGTGCTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTCCGAACCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTACCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

Protein sequence

MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG

Homology

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BLAST of Csor.00g027500.m01 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-38
Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           +S  SSCGACKFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 75  TQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIAN 124
             AAIT++YEAL RMRDP  GCV HIFAL Q+V +LQEEI+ LG+Q+ N
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKN 110

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BLAST of Csor.00g027500.m01 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.6e-34
Identity = 76/127 (59.84%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 11  SSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLP 70
           +SSSSSS S CGACKFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 71  MHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAA 130
           +  R +AAIT++YEA  R++DP  GCV HIFALQQ+V +LQ E++IL  Q A  +    +
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 131 ISAVENP 138
            ++ ENP
Sbjct: 122 PTS-ENP 127

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BLAST of Csor.00g027500.m01 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-31
Identity = 84/207 (40.58%), Postives = 112/207 (54.11%), Query Frame = 0


Query: 19  SSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRTQAA 78
           S CGACKFLRRKC   CVFAP F +++  +HFAA+HKVFGASNVSKLL HLP+  R +AA
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 79  ITVTYEALERMRDPANGCVLHIFALQQEVASLQEEI--------QILGTQIANLLTTGAA 138
           +T++YEA  R+RDP  GCV HIFALQQ+V +LQ ++        Q +  Q     T G  
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQGIHHQDVGATTKGGY 125

Query: 139 ISAVENPFIEMNDFGMNSNHCQNE-----LPSQLLPYQTSDDVQKDDQMISPLLCLGEKD 198
           +SA      +   +G  +  C +        SQ   Y ++         I+ LL  G   
Sbjct: 126 MSAAATAADDQLGYGGYNQWCGSNGGGAPAASQPGAYSSNGGAGHGHDSITALLAAGSDY 185

Query: 199 GGFGFYHSNHVVETSGFHVSVDENFGA 213
                YH+    E +G   +VD+   A
Sbjct: 186 MQHSLYHAFEHSEGAG---AVDDGHAA 209

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BLAST of Csor.00g027500.m01 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-31
Identity = 83/217 (38.25%), Postives = 117/217 (53.92%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           + S S CGACKFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 75  TQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISAV 134
            +AA T+ YEA  R +DP  GCV HIF+LQQ+V +LQ +++IL  Q         ++ A+
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAI 121

Query: 135 ENPFIE------------------MNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMIS 194
           ++P IE                  ++   + +++CQ E  S L    TS   Q + +   
Sbjct: 122 DSPSIENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDLKNIMTSCYHQMEIETTP 181

Query: 195 PLLCLGEKDGGFGFYHSNHVVETSGFHVSVDENFGAY 214
                G+   G  +Y+S+         VS +  F  Y
Sbjct: 182 FTGAGGDTMAGSYYYNSSSGCSEELKSVSTNGEFSKY 212

[Close]

BLAST of Csor.00g027500.m01 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.8e-31
Identity = 66/121 (54.55%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 9   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLH 68
           S + +++ + S CGACKFLRRKC+  C+FAP FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 69  LPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTG 128
           +P+H R +A +T+ YEA  R+ DP  GCV HIFALQQ+VA LQ ++  +  QIA   T+ 
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSA 123

Query: 129 A 130
           A
Sbjct: 124 A 124

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BLAST of Csor.00g027500.m01 vs. NCBI nr
Match: KAG6600983.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434 bits (1117), Expect = 1.38e-153
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218
           LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG
Sbjct: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218

[Close]

BLAST of Csor.00g027500.m01 vs. NCBI nr
Match: KAG7031596.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 425 bits (1093), Expect = 6.31e-150
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218
           LGEKDGG GF HSNHVVETSGFHVSVDENFGAYPWILG
Sbjct: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 218

[Close]

BLAST of Csor.00g027500.m01 vs. NCBI nr
Match: XP_022957254.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 415 bits (1066), Expect = 7.40e-146
Identity = 210/218 (96.33%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYDSSS   SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSS---SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPY+TSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218
           LGEKDGGFGF HSNHVVETSGF VSV+ENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of Csor.00g027500.m01 vs. NCBI nr
Match: XP_023006079.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 414 bits (1063), Expect = 2.36e-145
Identity = 208/218 (95.41%), Postives = 210/218 (96.33%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+DSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQT DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180

Query: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218
           LGEKDGGFGF HSNHVV TSGFHVSVDENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]

BLAST of Csor.00g027500.m01 vs. NCBI nr
Match: XP_023548244.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387 bits (994), Expect = 8.07e-135
Identity = 204/223 (91.48%), Postives = 206/223 (92.38%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSS---CGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60
           MTVLNSYDSSSSSSSSSSSS   CGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60

Query: 61  GASNVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQIL 120
           GASNVSKLLLHLPMHVR+QAAITVTYEALERMRDPANGCV HIFALQQEVASLQEEIQIL
Sbjct: 61  GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVFHIFALQQEVASLQEEIQIL 120

Query: 121 GTQIANLLTTGAAISAVENPFIEMND--FGMNSNHCQNELPSQLLPYQTSDDVQKDDQMI 180
           GTQIAN LTTGAAISAVENPFIEMND  FGMNSNH QN    QLLPYQTSD VQKDDQMI
Sbjct: 121 GTQIANFLTTGAAISAVENPFIEMNDYDFGMNSNHSQN----QLLPYQTSDGVQKDDQMI 180

Query: 181 SPLLCLGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218
           SPLLCLGEKDGGFGF HSNHVVE SGF VSV+ENFG YPWILG
Sbjct: 181 SPLLCLGEKDGGFGFCHSNHVVERSGFDVSVEENFGGYPWILG 219

[Close]

BLAST of Csor.00g027500.m01 vs. ExPASy TrEMBL
Match: A0A6J1H1E9 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458694 PE=3 SV=1)

HSP 1 Score: 415 bits (1066), Expect = 3.58e-146
Identity = 210/218 (96.33%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYDSSS   SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSS---SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPY+TSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218
           LGEKDGGFGF HSNHVVETSGF VSV+ENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of Csor.00g027500.m01 vs. ExPASy TrEMBL
Match: A0A6J1L156 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111498911 PE=3 SV=1)

HSP 1 Score: 414 bits (1063), Expect = 1.14e-145
Identity = 208/218 (95.41%), Postives = 210/218 (96.33%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+DSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQT DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180

Query: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218
           LGEKDGGFGF HSNHVV TSGFHVSVDENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]

BLAST of Csor.00g027500.m01 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 298 bits (762), Expect = 8.72e-100
Identity = 157/216 (72.69%), Postives = 180/216 (83.33%), Query Frame = 0


Query: 14  SSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHV 73
           SS+SS+SCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H+
Sbjct: 6   SSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHI 65

Query: 74  RTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISA 133
           R+ AAITV YEALERMRDP  GCV HIFALQQEVASLQEEI+ILG+QIAN  TTG +I+A
Sbjct: 66  RSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTGGSIAA 125

Query: 134 VENPFIE-------MNDFGM-NSNHCQNELPSQLLPYQTSDDVQKDD---QMISPLLCLG 193
           V+NPFI+       M+ FGM N+N+ QNEL S+L PYQ+ D+VQ D+   QMISPL CLG
Sbjct: 126 VDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSEL-PYQSFDNVQNDNTTAQMISPLFCLG 185

Query: 194 EKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218
           E+DG F F +SN+VVE+S F VSV+EN   YPWI+G
Sbjct: 186 EEDGVFEFSNSNNVVESSAFDVSVEENCIGYPWIVG 220

[Close]

BLAST of Csor.00g027500.m01 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 2.45e-97
Identity = 156/217 (71.89%), Postives = 178/217 (82.03%), Query Frame = 0


Query: 14  SSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHV 73
           SS++SSSCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H 
Sbjct: 6   SSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHT 65

Query: 74  RTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISA 133
           R+ AAITV YEALERMRDP  GC+ HIFALQQEV SLQEEI+ILG+QIANL TTG +I+A
Sbjct: 66  RSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIAA 125

Query: 134 VENPFIE--------MNDFGM-NSNHCQNELPSQLLPYQTSDDVQKDD--QMISPLLCLG 193
           VENPFI+        M+ F M N+N+ QNEL S+L PYQ+ D++Q D+  QMISPL CLG
Sbjct: 126 VENPFIDQVVQVSQQMDGFEMTNTNYYQNELASEL-PYQSFDNIQNDNTAQMISPLFCLG 185

Query: 194 EKDGGFGFYHSNHVVE-TSGFHVSVDENFGAYPWILG 218
           E+DG F F +SN+VVE TS F VSV+EN   YPWI+G
Sbjct: 186 EEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]

BLAST of Csor.00g027500.m01 vs. ExPASy TrEMBL
Match: A0A6J1K6X9 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111491723 PE=3 SV=1)

HSP 1 Score: 262 bits (670), Expect = 6.98e-86
Identity = 147/214 (68.69%), Postives = 168/214 (78.50%), Query Frame = 0


Query: 9   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLH 68
           SSSSSSSSSSSSCGACKFLRRKCS+ CVFAP F+YDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 6   SSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLH 65

Query: 69  LPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTG 128
           LPMHVR+ AAITV+YEALERMRDP  GCV HIF LQQE+ SLQEEI +LG+QIAN  T  
Sbjct: 66  LPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDM 125

Query: 129 AAISAVENPFIEM------NDFGMNSNHCQNELPSQLLPYQTSDDVQKDD-QMISPLLCL 188
             ++ VENP +E+      N+  MN+N  QNEL SQL    T D+VQ +D QMISPL C+
Sbjct: 126 DNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQL---PTFDEVQINDAQMISPLFCI 185

Query: 189 GEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPW 215
           GE++G FG  + N+ +E S F VSVDENF AY W
Sbjct: 186 GEEEGFFGC-NPNNAMENSAFDVSVDENF-AYLW 214

[Close]

BLAST of Csor.00g027500.m01 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-39
Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           +S  SSCGACKFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 75  TQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIAN 124
             AAIT++YEAL RMRDP  GCV HIFAL Q+V +LQEEI+ LG+Q+ N
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKN 110

[Close]

BLAST of Csor.00g027500.m01 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-35
Identity = 76/127 (59.84%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 11  SSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLP 70
           +SSSSSS S CGACKFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 71  MHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAA 130
           +  R +AAIT++YEA  R++DP  GCV HIFALQQ+V +LQ E++IL  Q A  +    +
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 131 ISAVENP 138
            ++ ENP
Sbjct: 122 PTS-ENP 127

[Close]

BLAST of Csor.00g027500.m01 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-32
Identity = 83/217 (38.25%), Postives = 117/217 (53.92%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           + S S CGACKFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 75  TQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISAV 134
            +AA T+ YEA  R +DP  GCV HIF+LQQ+V +LQ +++IL  Q         ++ A+
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAI 121

Query: 135 ENPFIE------------------MNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMIS 194
           ++P IE                  ++   + +++CQ E  S L    TS   Q + +   
Sbjct: 122 DSPSIENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDLKNIMTSCYHQMEIETTP 181

Query: 195 PLLCLGEKDGGFGFYHSNHVVETSGFHVSVDENFGAY 214
                G+   G  +Y+S+         VS +  F  Y
Sbjct: 182 FTGAGGDTMAGSYYYNSSSGCSEELKSVSTNGEFSKY 212

[Close]

BLAST of Csor.00g027500.m01 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 135.6 bits (340), Expect = 4.9e-32
Identity = 66/121 (54.55%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 9   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLH 68
           S + +++ + S CGACKFLRRKC+  C+FAP FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 69  LPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTG 128
           +P+H R +A +T+ YEA  R+ DP  GCV HIFALQQ+VA LQ ++  +  QIA   T+ 
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSA 123

Query: 129 A 130
           A
Sbjct: 124 A 124

[Close]

BLAST of Csor.00g027500.m01 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 134.8 bits (338), Expect = 8.3e-32
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 6   SYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKL 65
           S     SS       CGACKFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKL
Sbjct: 23  SSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKL 82

Query: 66  LLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANL 125
           LLH+P+H R+ A +T+ YEA  R+RDP  GCV HIFALQQ+V +LQ E+  L   +A+L
Sbjct: 83  LLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

The following BLAST results are available for this feature:

BLAST of Csor.00g027500.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	2.0e-38	71.56	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	6.6e-34	59.84	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	1.4e-31	40.58	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	4.0e-31	38.25	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
Q9SLB7	6.8e-31	54.55	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]

BLAST of Csor.00g027500.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600983.1	1.38e-153	100.00	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7031596.1	6.31e-150	98.17	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022957254.1	7.40e-146	96.33	LOB domain-containing protein 33-like [Cucurbita moschata]	[more]
XP_023006079.1	2.36e-145	95.41	LOB domain-containing protein 33-like [Cucurbita maxima]	[more]
XP_023548244.1	8.07e-135	91.48	LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g027500.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H1E9	3.58e-146	96.33	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458...	[more]
A0A6J1L156	1.14e-145	95.41	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149891...	[more]
A0A0A0KNX8	8.72e-100	72.69	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A1S3CGM1	2.45e-97	71.89	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]
A0A6J1K6X9	6.98e-86	68.69	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149172...	[more]

BLAST of Csor.00g027500.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	1.4e-39	71.56	LOB domain-containing protein 33	[more]
AT3G58190.1	4.7e-35	59.84	lateral organ boundaries-domain 29	[more]
AT2G42440.1	2.9e-32	38.25	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G42430.1	4.9e-32	54.55	lateral organ boundaries-domain 16	[more]
AT2G45420.1	8.3e-32	56.30	LOB domain-containing protein 18	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 17..160
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 17..160
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 20..116 e-value: 4.4E-32 score: 110.6
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 19..121 score: 21.317673

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g027500	Csor.00g027500	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g027500.m01.CDS01	Csor.00g027500.m01.CDS01	CDS
Csor.00g027500.m01.CDS02	Csor.00g027500.m01.CDS02	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g027500.m01.stop_codon01	Csor.00g027500.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g027500.m01.terminal01	Csor.00g027500.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g027500.m01.intron01	Csor.00g027500.m01.intron01	intron

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g027500.m01.initial01	Csor.00g027500.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g027500.m01.start_codon01	Csor.00g027500.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g027500.m01	Csor.00g027500.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus