Csor.00g026350.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g026350.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 5502959 .. 5503405 (+)
Sequence length	447
RNA-Seq Expression	Csor.00g026350.m01
Synteny	Csor.00g026350.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTCGTCTCTGCATCTCTCATAACACCACCACCCTCGCCACCCTTCTTCCACCGCTCCTCCACCGTCGTCTTCCACAAGCTCAGGCCAATTTCAGCCATTTCCCCATCATGGCTCTGCCGTCGGGTTGCGGCGGCAGCGCCAAGATGTGTTAGTCAGGGTGGTTGGGGGGGCTCTGTGGCGGAGCCGGAGATAGAAGAGTGGCTGAAGCTAGGGAGGTTGGAGGAGAAGTGTGGCGGAGGGGGGAAGGGAGTGGTGGAGCTGCTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGAGCCTACAGATTATAATAGGAGGGCTAAGATTTTCAGTACCAGTTCTGAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTCCTGATCCCCCACCAGGCTTGAATCTTGATGGTTCATCCCAATAA

mRNA sequence

ATGCAAGTCGTCTCTGCATCTCTCATAACACCACCACCCTCGCCACCCTTCTTCCACCGCTCCTCCACCGTCGTCTTCCACAAGCTCAGGCCAATTTCAGCCATTTCCCCATCATGGCTCTGCCGTCGGGTTGCGGCGGCAGCGCCAAGATGTGTTAGTCAGGGTGGTTGGGGGGGCTCTGTGGCGGAGCCGGAGATAGAAGAGTGGCTGAAGCTAGGGAGGTTGGAGGAGAAGTGTGGCGGAGGGGGGAAGGGAGTGGTGGAGCTGCTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGAGCCTACAGATTATAATAGGAGGGCTAAGATTTTCAGTACCAGTTCTGAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTCCTGATCCCCCACCAGGCTTGAATCTTGATGGTTCATCCCAATAA

Coding sequence (CDS)

ATGCAAGTCGTCTCTGCATCTCTCATAACACCACCACCCTCGCCACCCTTCTTCCACCGCTCCTCCACCGTCGTCTTCCACAAGCTCAGGCCAATTTCAGCCATTTCCCCATCATGGCTCTGCCGTCGGGTTGCGGCGGCAGCGCCAAGATGTGTTAGTCAGGGTGGTTGGGGGGGCTCTGTGGCGGAGCCGGAGATAGAAGAGTGGCTGAAGCTAGGGAGGTTGGAGGAGAAGTGTGGCGGAGGGGGGAAGGGAGTGGTGGAGCTGCTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGAGCCTACAGATTATAATAGGAGGGCTAAGATTTTCAGTACCAGTTCTGAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTCCTGATCCCCCACCAGGCTTGAATCTTGATGGTTCATCCCAATAA

Protein sequence

MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGSVAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQHSDAAPDPPPGLNLDGSSQ

Homology

[Close]

BLAST of Csor.00g026350.m01 vs. NCBI nr
Match: XP_022942933.1 (uncharacterized protein LOC111447817 [Cucurbita moschata] >KAG6600868.1 hypothetical protein SDJN03_06101, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031503.1 hypothetical protein SDJN02_05543, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305 bits (782), Expect = 8.12e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGS 60
           MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGS
Sbjct: 1   MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGS 60

Query: 61  VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 120
           VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS
Sbjct: 61  VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 120

Query: 121 SEVFQALKQHSDAAPDPPPGLNLDGSSQ 148
           SEVFQALKQHSDAAPDPPPGLNLDGSSQ
Sbjct: 121 SEVFQALKQHSDAAPDPPPGLNLDGSSQ 148

[Close]

BLAST of Csor.00g026350.m01 vs. NCBI nr
Match: XP_022988679.1 (uncharacterized protein LOC111485933 [Cucurbita maxima])

HSP 1 Score: 265 bits (677), Expect = 6.39e-89
Identity = 129/137 (94.16%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGS 60
           MQVVSASLI PPPSP FFHRSSTVVF K+RPISAISP W CRRVAAAAPRCVSQGGWGGS
Sbjct: 1   MQVVSASLIIPPPSPSFFHRSSTVVFPKIRPISAISPPWFCRRVAAAAPRCVSQGGWGGS 60

Query: 61  VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 120
           VAE EIEEWLKLGRL+EKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS
Sbjct: 61  VAEQEIEEWLKLGRLDEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 120

Query: 121 SEVFQALKQHSDAAPDP 137
           SEVFQALKQHSDAAPDP
Sbjct: 121 SEVFQALKQHSDAAPDP 137

[Close]

BLAST of Csor.00g026350.m01 vs. NCBI nr
Match: XP_023547061.1 (uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (667), Expect = 1.38e-86
Identity = 127/133 (95.49%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 5   SASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGSVAEP 64
           SASLI PPPSPPF HRSSTV F KLRPISAISP W CRRVAAAAPRCVSQGGWGGSVAEP
Sbjct: 60  SASLIIPPPSPPFLHRSSTVGFPKLRPISAISPPWFCRRVAAAAPRCVSQGGWGGSVAEP 119

Query: 65  EIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVF 124
           EIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVF
Sbjct: 120 EIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVF 179

Query: 125 QALKQHSDAAPDP 137
           QALKQHSDAAPDP
Sbjct: 180 QALKQHSDAAPDP 192

[Close]

BLAST of Csor.00g026350.m01 vs. NCBI nr
Match: XP_038892559.1 (uncharacterized protein LOC120081603 [Benincasa hispida])

HSP 1 Score: 223 bits (567), Expect = 4.28e-72
Identity = 108/136 (79.41%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 4   VSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGSVAE 63
           VSASLI PPP PP FHR ST VF K RP   IS  WL  R  A  PRCVSQGGWGGSVAE
Sbjct: 3   VSASLIIPPPPPPSFHRPSTAVFPKFRPTPPISSPWLRHRAGAVEPRCVSQGGWGGSVAE 62

Query: 64  PEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEV 123
            +IEEWLK G+LEEKCGGGGKGVVELLECLE+EAIMGEDEG++PTDYNRRAKIFSTSS+V
Sbjct: 63  LDIEEWLKSGKLEEKCGGGGKGVVELLECLEKEAIMGEDEGKDPTDYNRRAKIFSTSSKV 122

Query: 124 FQALKQHSDAAPDPPP 139
           FQALKQHSDAA  PPP
Sbjct: 123 FQALKQHSDAAAPPPP 138

[Close]

BLAST of Csor.00g026350.m01 vs. NCBI nr
Match: XP_011655051.1 (uncharacterized protein LOC105435471 [Cucumis sativus] >KGN50752.1 hypothetical protein Csa_005822 [Cucumis sativus])

HSP 1 Score: 208 bits (529), Expect = 2.81e-66
Identity = 105/139 (75.54%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 4   VSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAA--PRCVSQGGWGGSV 63
           +SASLI+PPP PP  HR ST  F  LRP  ++S  WLC R A A   PRCVSQGGWG SV
Sbjct: 3   LSASLISPPP-PPLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSV 62

Query: 64  A--EPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFST 123
              E +IEEWLKLGRLEEKCGGGGKG+VELLECLE+EAIMGEDEGR+PTDYNRRAKIFST
Sbjct: 63  GVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFST 122

Query: 124 SSEVFQALKQHSDAAPDPP 138
           SSEVFQALKQHSDA   PP
Sbjct: 123 SSEVFQALKQHSDAVAPPP 140

[Close]

BLAST of Csor.00g026350.m01 vs. ExPASy TrEMBL
Match: A0A6J1FW01 (uncharacterized protein LOC111447817 OS=Cucurbita moschata OX=3662 GN=LOC111447817 PE=4 SV=1)

HSP 1 Score: 305 bits (782), Expect = 3.93e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGS 60
           MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGS
Sbjct: 1   MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGS 60

Query: 61  VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 120
           VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS
Sbjct: 61  VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 120

Query: 121 SEVFQALKQHSDAAPDPPPGLNLDGSSQ 148
           SEVFQALKQHSDAAPDPPPGLNLDGSSQ
Sbjct: 121 SEVFQALKQHSDAAPDPPPGLNLDGSSQ 148

[Close]

BLAST of Csor.00g026350.m01 vs. ExPASy TrEMBL
Match: A0A6J1JM89 (uncharacterized protein LOC111485933 OS=Cucurbita maxima OX=3661 GN=LOC111485933 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 3.09e-89
Identity = 129/137 (94.16%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MQVVSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGS 60
           MQVVSASLI PPPSP FFHRSSTVVF K+RPISAISP W CRRVAAAAPRCVSQGGWGGS
Sbjct: 1   MQVVSASLIIPPPSPSFFHRSSTVVFPKIRPISAISPPWFCRRVAAAAPRCVSQGGWGGS 60

Query: 61  VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 120
           VAE EIEEWLKLGRL+EKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS
Sbjct: 61  VAEQEIEEWLKLGRLDEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 120

Query: 121 SEVFQALKQHSDAAPDP 137
           SEVFQALKQHSDAAPDP
Sbjct: 121 SEVFQALKQHSDAAPDP 137

[Close]

BLAST of Csor.00g026350.m01 vs. ExPASy TrEMBL
Match: A0A0A0KQQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 1.36e-66
Identity = 105/139 (75.54%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 4   VSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAA--PRCVSQGGWGGSV 63
           +SASLI+PPP PP  HR ST  F  LRP  ++S  WLC R A A   PRCVSQGGWG SV
Sbjct: 3   LSASLISPPP-PPLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSV 62

Query: 64  A--EPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFST 123
              E +IEEWLKLGRLEEKCGGGGKG+VELLECLE+EAIMGEDEGR+PTDYNRRAKIFST
Sbjct: 63  GVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFST 122

Query: 124 SSEVFQALKQHSDAAPDPP 138
           SSEVFQALKQHSDA   PP
Sbjct: 123 SSEVFQALKQHSDAVAPPP 140

[Close]

BLAST of Csor.00g026350.m01 vs. ExPASy TrEMBL
Match: A0A5D3DSR0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00240 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 3.11e-62
Identity = 102/138 (73.91%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 4   VSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAA--PRCVSQGGWGGSV 63
           +SASLI PPP      R ST  F KLR   A+S  WL  R A A   PRCVSQGGWG SV
Sbjct: 3   LSASLIIPPP----LLRPSTAFFPKLRSTPALSSPWLGHRAAEAVVEPRCVSQGGWGTSV 62

Query: 64  AEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSS 123
           AE +IEEWLKLGRLEEKCG GGKG+VELLECLE+EAIMGEDEGREPTDYNRRAKIFSTSS
Sbjct: 63  AEVDIEEWLKLGRLEEKCGSGGKGIVELLECLEKEAIMGEDEGREPTDYNRRAKIFSTSS 122

Query: 124 EVFQALKQHSDAAPDPPP 139
           EVFQALKQH D    PPP
Sbjct: 123 EVFQALKQHPDVVAPPPP 136

[Close]

BLAST of Csor.00g026350.m01 vs. ExPASy TrEMBL
Match: A0A1S3C540 (uncharacterized protein LOC103496760 OS=Cucumis melo OX=3656 GN=LOC103496760 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 3.15e-61
Identity = 102/138 (73.91%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 4   VSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAA--PRCVSQGGWGGSV 63
           +SASLI PPP      R ST  F KLR   A+S  WL  R A A   PRCVSQGGWG SV
Sbjct: 75  LSASLIIPPP----LLRPSTAFFPKLRSTPALSSPWLGHRAAEAVVEPRCVSQGGWGTSV 134

Query: 64  AEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSS 123
           AE +IEEWLKLGRLEEKCG GGKG+VELLECLE+EAIMGEDEGREPTDYNRRAKIFSTSS
Sbjct: 135 AEVDIEEWLKLGRLEEKCGSGGKGIVELLECLEKEAIMGEDEGREPTDYNRRAKIFSTSS 194

Query: 124 EVFQALKQHSDAAPDPPP 139
           EVFQALKQH D    PPP
Sbjct: 195 EVFQALKQHPDVVAPPPP 208

[Close]

BLAST of Csor.00g026350.m01 vs. TAIR 10
Match: AT5G05220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-18
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 25  VFHKLRPISAISPSWLCRRVA----AAAPRCVSQGGWGGSVAEP-EIEEWLKLGRLEEKC 84
           ++    P++AI  + L  +V      AA RCV+ G    +  EP   EE  +L +    C
Sbjct: 19  IYKTSSPVTAIPQTKLSLKVKKERWVAAARCVASGSDYAAAMEPITPEEEEELTQRRGIC 78

Query: 85  GGG-GKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQHSDAAP 136
           GG   +GV ELLECLE+EAIMG D+GR+P DYNRRAKIF  SS++F+ L +  D AP
Sbjct: 79  GGEVNRGVWELLECLEKEAIMGNDDGRDPRDYNRRAKIFDKSSKIFKNLNEQRDQAP 135

The following BLAST results are available for this feature:

BLAST of Csor.00g026350.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g026350.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942933.1	8.12e-105	100.00	uncharacterized protein LOC111447817 [Cucurbita moschata] >KAG6600868.1 hypothet...	[more]
XP_022988679.1	6.39e-89	94.16	uncharacterized protein LOC111485933 [Cucurbita maxima]	[more]
XP_023547061.1	1.38e-86	95.49	uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo]	[more]
XP_038892559.1	4.28e-72	79.41	uncharacterized protein LOC120081603 [Benincasa hispida]	[more]
XP_011655051.1	2.81e-66	75.54	uncharacterized protein LOC105435471 [Cucumis sativus] >KGN50752.1 hypothetical ...	[more]

BLAST of Csor.00g026350.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW01	3.93e-105	100.00	uncharacterized protein LOC111447817 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A6J1JM89	3.09e-89	94.16	uncharacterized protein LOC111485933 OS=Cucurbita maxima OX=3661 GN=LOC111485933...	[more]
A0A0A0KQQ4	1.36e-66	75.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1	[more]
A0A5D3DSR0	3.11e-62	73.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C540	3.15e-61	73.91	uncharacterized protein LOC103496760 OS=Cucumis melo OX=3656 GN=LOC103496760 PE=...	[more]

BLAST of Csor.00g026350.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05220.1	4.6e-18	45.30	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..148
None	No IPR available	PANTHER	PTHR37758	OS03G0334300 PROTEIN	coord: 37..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g026350	Csor.00g026350	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g026350.m01.CDS01	Csor.00g026350.m01.CDS01	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g026350.m01.start_codon01	Csor.00g026350.m01.start_codon01	start_codon

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g026350.m01.single01	Csor.00g026350.m01.single01	single

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g026350.m01.stop_codon01	Csor.00g026350.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g026350.m01	Csor.00g026350.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast