Csor.00g024430.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g024430.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial-like
Location	Csor_Chr04: 4420958 .. 4423063 (+)
Sequence length	297
RNA-Seq Expression	Csor.00g024430.m01
Synteny	Csor.00g024430.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCGTAAGTCTCTCTCTCGGTATTTCTGGATATGTTTTTTTCTTTATGGACGGAAATTTTCTTGTTACTTTTGGCAACTTCGTTTAGCCCATTCATTTTCCTGGCCTATTTTTATGATGAAATTGGGGAAACTAGGATGATGTTAATTATTGAATCGTTTTCAGAAATTTGGACCAAGATAATTTGGTCGGGCGCTCTTTGTTCCTTTTAGATTGCAAGTCTTGCGAGGGGAGGTTTTTTTTTTTCCCTTAAATTTTAAATTCAGATTTAAATGTTAAATCATAGTATGGGATGGGAGTATATACATGACATATTTGACAATTAACTGTAGATAGGGTTTCCAGTTGCTAAAGGAGTAGTTTTGATTTAAAGTTCGTGGTAAGGAAAAAGACAAGAGGGGCAAAAGCTTCCTGTTCCATTACTGAGTGGCAACAATATCATTCTTGATTTCTGTAATTACATAAAAATTCTTTCTAAAGTCTTAGATGTGGCTTGTGGTAGGTTCAGTTTCCTTTTGATTTCACATAAATACGACATGAAGGAAAGGGAATATGCAGTAAGTTTATTAGACGGTTTAGGGCTTTAGTTAAAAAAAAATTCTTCTCTGGGAAGTTTATACACCTCTAATCCTACGCCTGCCTCTTATTTCTTTATTTCCCCCATTTTTTCTTTCTTTCTTTTCCCCACACAATTCTGGGTTGCGAGTAAGGGGACGAATATTATTCTGTGTTTTGAGGTGATTTCAGTAAATTGTTGGAGCTAAACCAATCTGTGCTGTGAATTTATTTTATATTGTTCCACCATAACATATACTTGATGGTGGCCTTTACTTAGTTGGGTACCGATTATGTATTGTTATTTTTAAATACTATTTCAGACTTATAGTGTACAAACAAGTGGGAGAGAAAAATTTTATGCAGGAGCGCAATGGTGCTTGTACTGCCTATGCTTTATCTCTCATACAACCTTTCTTTCTTTATTTCAGTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTGAGCTACAACTTTAGTCAATTTATAATTTTCCTACCACTTCTCAATATCCTAGTTGCATTATTCATTGTACTCTCATGTGTGGCCAATTCATTTTTGTTTGGGTTTTCATTGTATGCAGGCATACCCATATTTGCACATACGCAATAAGGAGTTCCCATGGGGTAAGTTTCCATTGCATTACAAGTTCTATGACATCTTTTATATCTCTTGGCAGTCGCAATTTGGGTTTTGATGAGGTAACTAGAACTGGATTCTGCAGTGATGTCATGTAGTATATATTTACTGGACGCCAAGCAAACTTACATTCATCTTGTAACTAATATATTTACTGCTAACTTGGCAGCTAGCAACTAATATGCTCATAAATACCTCGTTCAGCTTGCTAACAGTTTTTAGTCCTATTATAACCTTGTCCTTTCATTAACCCAACTCTCACTACTTTTAAATGCTCCATGGTCAAATTTCTAATGGTAGTTCAACAGCTTCCTCTTTCTGTTGGTCGATCATCTCAAGGGTCTATGGATACTTATGGGATAAAAGTGTTTGTAAGCTGTTTCCAAGAAGTAAACATTTTAGAATAAAAGTTATATGTTTTTGTAACTGTTTTCGACAGTTGCTTCACTCAGTATATTTTAGAAGAACTGCAGTTGAAATGTTAAAATCTTTACAAACGAAAAAGTCATAGCATCATCGTAGGAAAAAGAGCTGGAGATGATGTACCACGGTATTTGTCAGAACTGGTTGAATTTGATCAATGATCTTATATTCGTTCATCTTTGCTCTCTGCTCGTTGCTCATTTGCTCCTTTTCTGTTTATTATTTATTGTGAAAATAATATTGTTTTATTTTCAATCCCTTTTGCATCAGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGA

mRNA sequence

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAGGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGA

Coding sequence (CDS)

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAGGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGA

Protein sequence

MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

Homology

[Close]

BLAST of Csor.00g024430.m01 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-33
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of Csor.00g024430.m01 vs. NCBI nr
Match: XP_022941809.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6600678.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031316.1 Cytochrome c oxidase subunit 6a, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202 bits (515), Expect = 1.06e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. NCBI nr
Match: XP_023001309.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 200 bits (509), Expect = 8.74e-65
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. NCBI nr
Match: XP_023545456.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200 bits (509), Expect = 8.74e-65
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          M+MATIRSNLLRAAFRGASRNSAQPKRGF+SSAHDDALETAKWEKITYAGIAACTTLAFY
Sbjct: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. NCBI nr
Match: XP_038905594.1 (cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida])

HSP 1 Score: 192 bits (488), Expect = 1.40e-61
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMA+IRSNLLRAA RGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGIA CT LAFY
Sbjct: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6577328.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (486), Expect = 2.82e-61
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGI +C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. ExPASy TrEMBL
Match: A0A6J1FPI8 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447063 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 5.14e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 200 bits (509), Expect = 4.23e-65
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 191 bits (486), Expect = 1.37e-61
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGI +C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. ExPASy TrEMBL
Match: A0A6J1C3V4 (cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008246 PE=3 SV=1)

HSP 1 Score: 191 bits (484), Expect = 2.76e-61
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 98

[Close]

BLAST of Csor.00g024430.m01 vs. ExPASy TrEMBL
Match: A0A6J1J8L1 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482732 PE=3 SV=1)

HSP 1 Score: 187 bits (475), Expect = 6.52e-60
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMA IRSNLLRAAFRGASRN AQPKRGFASSAHDDA ETAKWEKITYAGI +C+ LAFY
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Csor.00g024430.m01 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-34
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of Csor.00g024430.m01 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-26
Identity = 62/99 (62.63%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PP          EFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWGPDGLFEVKHN 89

The following BLAST results are available for this feature:

BLAST of Csor.00g024430.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T070	1.9e-33	70.71	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Csor.00g024430.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941809.1	1.06e-65	100.00	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG660...	[more]
XP_023001309.1	8.74e-65	98.98	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]	[more]
XP_023545456.1	8.74e-65	97.96	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
XP_038905594.1	1.40e-61	94.90	cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida]	[more]
XP_022929363.1	2.82e-61	93.88	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG657...	[more]

BLAST of Csor.00g024430.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPI8	5.14e-66	100.00	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1KMD3	4.23e-65	98.98	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1ERW3	1.37e-61	93.88	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1C3V4	2.76e-61	93.88	cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1J8L1	6.52e-60	91.84	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Csor.00g024430.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37830.1	1.4e-34	70.71	cytochrome c oxidase-related	[more]
AT4G37830.2	2.3e-26	62.63	cytochrome c oxidase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001349	Cytochrome c oxidase, subunit VIa	PIRSF	PIRSF000277	COX_VIa	coord: 1..98 e-value: 2.2E-22 score: 77.3
IPR001349	Cytochrome c oxidase, subunit VIa	PFAM	PF02046	COX6A	coord: 38..88 e-value: 2.0E-5 score: 25.0
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..98
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	GENE3D	4.10.95.10	Cytochrome c oxidase, subunit VIa	coord: 29..98 e-value: 6.9E-14 score: 53.5
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	SUPERFAMILY	81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..97
None	No IPR available	PANTHER	PTHR11504:SF6	CYTOCHROME C OXIDASE SUBUNIT 6A1-RELATED	coord: 1..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g024430	Csor.00g024430	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g024430.m01.CDS01	Csor.00g024430.m01.CDS01	CDS
Csor.00g024430.m01.CDS02	Csor.00g024430.m01.CDS02	CDS
Csor.00g024430.m01.CDS03	Csor.00g024430.m01.CDS03	CDS
Csor.00g024430.m01.CDS04	Csor.00g024430.m01.CDS04	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g024430.m01.start_codon01	Csor.00g024430.m01.start_codon01	start_codon

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g024430.m01.initial01	Csor.00g024430.m01.initial01	initial

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g024430.m01.intron01	Csor.00g024430.m01.intron01	intron
Csor.00g024430.m01.intron02	Csor.00g024430.m01.intron02	intron
Csor.00g024430.m01.intron03	Csor.00g024430.m01.intron03	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g024430.m01.internal01	Csor.00g024430.m01.internal01	internal
Csor.00g024430.m01.internal02	Csor.00g024430.m01.internal02	internal

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g024430.m01.terminal01	Csor.00g024430.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g024430.m01.stop_codon01	Csor.00g024430.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g024430.m01	Csor.00g024430.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0030234	enzyme regulator activity