Csor.00g023510.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g023510.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	tRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6, putative
Location	Csor_Chr04: 3918289 .. 3918987 (-)
Sequence length	699
RNA-Seq Expression	Csor.00g023510.m01
Synteny	Csor.00g023510.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTCTTCTTCCACAAAACAGAGAAAGTTTTGAGCCCTAATCTCCTCCAAATGTTCCCCAAGTTCTTCCGATTCCTAGAGCTCTGCTTCCTGCTCCTTTTCCTCTCCTGGATCCTCTCTCGGCTCCCGATCGCCCTCACAATCTCCGCCGACTTCTTCCGAAAACTCTTCGGCTTCCTAGCCAGTCCGCTCTTCGGATTCCTCCTCTGTAACGCCATTATCTTCGCACTACTTGCAAAACCTACCAAATTTTCAGACCGCAGCGCCGTAACCATCGTCGATGGAGACGAAATCGATCGGATTTACGCAGACCTAATCGAAAAATCTGGAAGCGACGGCGTGCATGAACGCAAGGTGGAGACTGTGTACCAGGACAAACAGATCATCGCGGAGCCGATTAGTTCAATCGATCACAAAATTGAAGAGAGGAACGCGGATACGGAGTCCGAATCTGGAGTAGATCATCCGAAAGTGATATTGAGGACGCTATCAGAGAAACTTAAGCCGAAAACGCAGAGTGAGAAGCTCCGCCGTTCAGAGACGGAGAAGTGCCGGAATCTGGAGCATTCGCACGACATTTTGTACTACCAGGACGATTTGAGCAGCGAGGAATTTCAAAGGAAGATTGAGGCGTTCATAGCGAAAGAGAAGAAGTTTCGACGGGAAGAATCTTCCGCCATTGTACTCCACTGA

mRNA sequence

ATGGATTTGTTCTTCTTCCACAAAACAGAGAAAGTTTTGAGCCCTAATCTCCTCCAAATGTTCCCCAAGTTCTTCCGATTCCTAGAGCTCTGCTTCCTGCTCCTTTTCCTCTCCTGGATCCTCTCTCGGCTCCCGATCGCCCTCACAATCTCCGCCGACTTCTTCCGAAAACTCTTCGGCTTCCTAGCCAGTCCGCTCTTCGGATTCCTCCTCTGTAACGCCATTATCTTCGCACTACTTGCAAAACCTACCAAATTTTCAGACCGCAGCGCCGTAACCATCGTCGATGGAGACGAAATCGATCGGATTTACGCAGACCTAATCGAAAAATCTGGAAGCGACGGCGTGCATGAACGCAAGGTGGAGACTGTGTACCAGGACAAACAGATCATCGCGGAGCCGATTAGTTCAATCGATCACAAAATTGAAGAGAGGAACGCGGATACGGAGTCCGAATCTGGAGTAGATCATCCGAAAGTGATATTGAGGACGCTATCAGAGAAACTTAAGCCGAAAACGCAGAGTGAGAAGCTCCGCCGTTCAGAGACGGAGAAGTGCCGGAATCTGGAGCATTCGCACGACATTTTGTACTACCAGGACGATTTGAGCAGCGAGGAATTTCAAAGGAAGATTGAGGCGTTCATAGCGAAAGAGAAGAAGTTTCGACGGGAAGAATCTTCCGCCATTGTACTCCACTGA

Coding sequence (CDS)

ATGGATTTGTTCTTCTTCCACAAAACAGAGAAAGTTTTGAGCCCTAATCTCCTCCAAATGTTCCCCAAGTTCTTCCGATTCCTAGAGCTCTGCTTCCTGCTCCTTTTCCTCTCCTGGATCCTCTCTCGGCTCCCGATCGCCCTCACAATCTCCGCCGACTTCTTCCGAAAACTCTTCGGCTTCCTAGCCAGTCCGCTCTTCGGATTCCTCCTCTGTAACGCCATTATCTTCGCACTACTTGCAAAACCTACCAAATTTTCAGACCGCAGCGCCGTAACCATCGTCGATGGAGACGAAATCGATCGGATTTACGCAGACCTAATCGAAAAATCTGGAAGCGACGGCGTGCATGAACGCAAGGTGGAGACTGTGTACCAGGACAAACAGATCATCGCGGAGCCGATTAGTTCAATCGATCACAAAATTGAAGAGAGGAACGCGGATACGGAGTCCGAATCTGGAGTAGATCATCCGAAAGTGATATTGAGGACGCTATCAGAGAAACTTAAGCCGAAAACGCAGAGTGAGAAGCTCCGCCGTTCAGAGACGGAGAAGTGCCGGAATCTGGAGCATTCGCACGACATTTTGTACTACCAGGACGATTTGAGCAGCGAGGAATTTCAAAGGAAGATTGAGGCGTTCATAGCGAAAGAGAAGAAGTTTCGACGGGAAGAATCTTCCGCCATTGTACTCCACTGA

Protein sequence

MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFGFLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERKVETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH

Homology

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BLAST of Csor.00g023510.m01 vs. NCBI nr
Match: KAG6600586.1 (hypothetical protein SDJN03_05819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 436 bits (1121), Expect = 9.94e-154
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60
           MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG
Sbjct: 1   MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60

Query: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120
           FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK
Sbjct: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120

Query: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180
           VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR
Sbjct: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180

Query: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232
           SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH
Sbjct: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232

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BLAST of Csor.00g023510.m01 vs. NCBI nr
Match: KAG7031227.1 (hypothetical protein SDJN02_05267, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434 bits (1117), Expect = 4.05e-153
Identity = 231/232 (99.57%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60
           MDLFFFHKTEKVLSPNLLQ+FPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG
Sbjct: 1   MDLFFFHKTEKVLSPNLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60

Query: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120
           FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK
Sbjct: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120

Query: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180
           VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR
Sbjct: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180

Query: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232
           SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH
Sbjct: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232

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BLAST of Csor.00g023510.m01 vs. NCBI nr
Match: XP_022942847.1 (uncharacterized protein LOC111447754 [Cucurbita moschata])

HSP 1 Score: 431 bits (1108), Expect = 9.53e-152
Identity = 228/232 (98.28%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60
           MDLFFFHKTEKVLSPNLLQ+FPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG
Sbjct: 1   MDLFFFHKTEKVLSPNLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60

Query: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120
           FLASPLFGFLLCNAIIFALL KPTKFSDRSAVT+VDGDEIDRIYADLIEKSGSDGVHERK
Sbjct: 61  FLASPLFGFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDGVHERK 120

Query: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180
           VETVY+DKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR
Sbjct: 121 VETVYKDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180

Query: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232
           SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH
Sbjct: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232

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BLAST of Csor.00g023510.m01 vs. NCBI nr
Match: XP_022989466.1 (uncharacterized protein LOC111486513 [Cucurbita maxima])

HSP 1 Score: 419 bits (1076), Expect = 7.19e-147
Identity = 223/232 (96.12%), Postives = 227/232 (97.84%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60
           MDLFFFHKTEK LSPNLLQ+FPKFFRFLELCFLLLFLSW LSRLPIALTISADFFRKLFG
Sbjct: 1   MDLFFFHKTEKGLSPNLLQIFPKFFRFLELCFLLLFLSWSLSRLPIALTISADFFRKLFG 60

Query: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120
           FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVT+VDGDEIDRIYADLIEKSGSD VHER+
Sbjct: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDDVHERE 120

Query: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180
           VE VYQDKQIIAEPISSI HKIEERNADTESESG+DHPKVILRTLSEKLKPKTQSEKLRR
Sbjct: 121 VEIVYQDKQIIAEPISSIGHKIEERNADTESESGLDHPKVILRTLSEKLKPKTQSEKLRR 180

Query: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232
           SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH
Sbjct: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232

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BLAST of Csor.00g023510.m01 vs. NCBI nr
Match: XP_023544640.1 (uncharacterized protein LOC111804161 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418 bits (1075), Expect = 1.02e-146
Identity = 223/232 (96.12%), Postives = 226/232 (97.41%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60
           MDLFFFHKTEK LSPNLLQ+FPKFFRFLELCFLLLFLSW LSRLPIALTISADFFRKLFG
Sbjct: 1   MDLFFFHKTEKGLSPNLLQIFPKFFRFLELCFLLLFLSWSLSRLPIALTISADFFRKLFG 60

Query: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120
           FLASPLFGFLLCNAIIF LLAKPTKFSDRSAV++VDGDEIDRIYA LIEKSGSDGVHERK
Sbjct: 61  FLASPLFGFLLCNAIIFTLLAKPTKFSDRSAVSVVDGDEIDRIYAVLIEKSGSDGVHERK 120

Query: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180
           VE VYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQ EKLRR
Sbjct: 121 VEIVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQREKLRR 180

Query: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232
           SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH
Sbjct: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232

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BLAST of Csor.00g023510.m01 vs. ExPASy TrEMBL
Match: A0A6J1FRE0 (uncharacterized protein LOC111447754 OS=Cucurbita moschata OX=3662 GN=LOC111447754 PE=4 SV=1)

HSP 1 Score: 431 bits (1108), Expect = 4.61e-152
Identity = 228/232 (98.28%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60
           MDLFFFHKTEKVLSPNLLQ+FPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG
Sbjct: 1   MDLFFFHKTEKVLSPNLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60

Query: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120
           FLASPLFGFLLCNAIIFALL KPTKFSDRSAVT+VDGDEIDRIYADLIEKSGSDGVHERK
Sbjct: 61  FLASPLFGFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDGVHERK 120

Query: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180
           VETVY+DKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR
Sbjct: 121 VETVYKDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180

Query: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232
           SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH
Sbjct: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232

[Close]

BLAST of Csor.00g023510.m01 vs. ExPASy TrEMBL
Match: A0A6J1JK52 (uncharacterized protein LOC111486513 OS=Cucurbita maxima OX=3661 GN=LOC111486513 PE=4 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 3.48e-147
Identity = 223/232 (96.12%), Postives = 227/232 (97.84%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFG 60
           MDLFFFHKTEK LSPNLLQ+FPKFFRFLELCFLLLFLSW LSRLPIALTISADFFRKLFG
Sbjct: 1   MDLFFFHKTEKGLSPNLLQIFPKFFRFLELCFLLLFLSWSLSRLPIALTISADFFRKLFG 60

Query: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSDGVHERK 120
           FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVT+VDGDEIDRIYADLIEKSGSD VHER+
Sbjct: 61  FLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDDVHERE 120

Query: 121 VETVYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEKLRR 180
           VE VYQDKQIIAEPISSI HKIEERNADTESESG+DHPKVILRTLSEKLKPKTQSEKLRR
Sbjct: 121 VEIVYQDKQIIAEPISSIGHKIEERNADTESESGLDHPKVILRTLSEKLKPKTQSEKLRR 180

Query: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232
           SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH
Sbjct: 181 SETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 232

[Close]

BLAST of Csor.00g023510.m01 vs. ExPASy TrEMBL
Match: A0A6J1C5K3 (uncharacterized protein LOC111008461 OS=Momordica charantia OX=3673 GN=LOC111008461 PE=4 SV=1)

HSP 1 Score: 281 bits (718), Expect = 1.77e-92
Identity = 166/245 (67.76%), Postives = 191/245 (77.96%), Query Frame = 0


Query: 1   MDLFFFHKTEKV------LSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADF 60
           MD FFF K EK        S NLLQ+F K FRFLELC LL+FLSWILSRLP A+ IS ++
Sbjct: 1   MDFFFFDKAEKPPTAIPRSSCNLLQIFAKVFRFLELCLLLVFLSWILSRLPFAVRISGEY 60

Query: 61  FRKLFGFLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGSD 120
           F KLF F+ASPLFGF+LCNAII AL+AKP++ S R  V + DG E DR+Y DLI KSG+ 
Sbjct: 61  FTKLFAFVASPLFGFILCNAIIVALVAKPSQLSGRR-VAVGDGGETDRLYEDLIVKSGNG 120

Query: 121 GVHERKVET---VYQDKQIIAEPISSIDHKIEERNADTESESGVDHPKVILRTLSEKLK- 180
            + E   E    V+QDK+IIAE I+SID  +E ++ D E+ESG+DHPKVI RTLSEK+K 
Sbjct: 121 DLPESPSEDGEIVFQDKEIIAEAINSIDRDVEVKSTDPEAESGIDHPKVIRRTLSEKIKR 180

Query: 181 --PKTQSEKLRRSETEKCRN-LEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESS 232
              KTQSEKLRRSETEKCRN LE SHDI+YYQDDLSSEEFQRKIEAFIA+EKKFRREESS
Sbjct: 181 ECSKTQSEKLRRSETEKCRNILEQSHDIVYYQDDLSSEEFQRKIEAFIAREKKFRREESS 240

[Close]

BLAST of Csor.00g023510.m01 vs. ExPASy TrEMBL
Match: A0A5D3CYU3 (Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005060 PE=4 SV=1)

HSP 1 Score: 273 bits (697), Expect = 2.84e-89
Identity = 169/247 (68.42%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSP----NLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFR 60
           MD FFF K EK+ +P    NLLQ+F KFFRFLEL FLLL LSWI SRLPIAL ISAD+F 
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISADYFT 60

Query: 61  KLFGFLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGS--- 120
           KLF F+A+PLFGFLLCNAII AL+AKP++FS R A +    D+ DRIY DLIEK+G+   
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFS-RPATS----DQTDRIYEDLIEKTGTGSD 120

Query: 121 --DGVHERKVETVYQDKQIIAE----PISSIDHKIEERNADTESESGVDHPKVILRTLSE 180
             D   E   E VYQDK+IIAE       S D +IE +N D ES+SG+ H KVILR+LSE
Sbjct: 121 LTDSASEEVEEIVYQDKEIIAEGRVGSNYSTDCEIELKNTDLESDSGLGHSKVILRSLSE 180

Query: 181 KLKP---KTQSEKLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRRE 231
           KL     KTQSEKLRRSETEKCRNLE+S+DILYYQDDLSSEEFQRKIEAFIAKEKKFRRE
Sbjct: 181 KLNRECVKTQSEKLRRSETEKCRNLEYSNDILYYQDDLSSEEFQRKIEAFIAKEKKFRRE 240

[Close]

BLAST of Csor.00g023510.m01 vs. ExPASy TrEMBL
Match: A0A1S3BT40 (uncharacterized protein LOC103493205 OS=Cucumis melo OX=3656 GN=LOC103493205 PE=4 SV=1)

HSP 1 Score: 273 bits (697), Expect = 2.84e-89
Identity = 169/247 (68.42%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 1   MDLFFFHKTEKVLSP----NLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFR 60
           MD FFF K EK+ +P    NLLQ+F KFFRFLEL FLLL LSWI SRLPIAL ISAD+F 
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISADYFT 60

Query: 61  KLFGFLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGDEIDRIYADLIEKSGS--- 120
           KLF F+A+PLFGFLLCNAII AL+AKP++FS R A +    D+ DRIY DLIEK+G+   
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFS-RPATS----DQTDRIYEDLIEKTGTGSD 120

Query: 121 --DGVHERKVETVYQDKQIIAE----PISSIDHKIEERNADTESESGVDHPKVILRTLSE 180
             D   E   E VYQDK+IIAE       S D +IE +N D ES+SG+ H KVILR+LSE
Sbjct: 121 LTDSASEEVEEIVYQDKEIIAEGRVGSNYSTDCEIELKNTDLESDSGLGHSKVILRSLSE 180

Query: 181 KLKP---KTQSEKLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRRE 231
           KL     KTQSEKLRRSETEKCRNLE+S+DILYYQDDLSSEEFQRKIEAFIAKEKKFRRE
Sbjct: 181 KLNRECVKTQSEKLRRSETEKCRNLEYSNDILYYQDDLSSEEFQRKIEAFIAKEKKFRRE 240

[Close]

BLAST of Csor.00g023510.m01 vs. TAIR 10
Match: AT5G66440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-23
Identity = 90/255 (35.29%), Postives = 132/255 (51.76%), Query Frame = 0


Query: 1   MDLFFFH--KTEKVLSPNLLQMF---PKFFRFLELCFLLLFLSWILSRLPIALTISADFF 60
           MD F F   K EK  +      F    +FFR  E+C  LLF+ W  S+LP  + IS  F 
Sbjct: 1   MDSFDFDNVKAEKAKALRRFNRFCRIGRFFRAAEVCVALLFIFWTFSQLPFVVQISGAFL 60

Query: 61  RKLFGFLASPLFGFLLCNAIIFALLAKPTKFSDRSAVTIVDGD-EIDRIYADLIEKSGSD 120
           R++   +++PLF FLL N+I+  LL   TK SD++   +   + EI + +   +E     
Sbjct: 61  RRIAAVISTPLFVFLLGNSIVVVLL---TKSSDQTTTAVASAETEIYQAFVRSVENRSKP 120

Query: 121 GVHERKVETVYQDKQII-----AEPISSIDHKIEERNADTESESGVDHPKVILRTLSE-- 180
              +     VY DKQ+I     + P  ++D  +     D++S     H KV  R+ S+  
Sbjct: 121 SDEDLTEGIVYDDKQVIVTDLDSNPNLTVDENMPHVEIDSDSS---PHSKVYGRSKSDVS 180

Query: 181 -----KLKPKTQSEKLRRSETEK-CRNLEHSHDI----LYYQDDLSSEEFQRKIEAFIAK 233
                 +        L+RSETEK C+  E+  D      Y +DDLS+EEFQ+ IEAFIAK
Sbjct: 181 GKQSSNMVMMMMKRSLQRSETEKFCKETENDDDSEEEKNYPEDDLSNEEFQKTIEAFIAK 240

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BLAST of Csor.00g023510.m01 vs. TAIR 10
Match: AT4G34560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08
Identity = 68/234 (29.06%), Postives = 111/234 (47.44%), Query Frame = 0


Query: 8   KTEKVLSPNLLQMFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFGFLASPLF 67
           K+  +L+   ++ F   FR  EL  L++ +S +    P ++ IS D F++   FL SP F
Sbjct: 13  KSRGILNFQAIRSFTSLFRLFELLLLVILISKL--SFP-SVKISGDIFKEAAVFLVSPRF 72

Query: 68  GFLLCNAIIFALLAKPTKFSD--RSAVTIVDGDEIDRIYADLIEKSGSDGVHERKVETVY 127
            F + NAI+  LLAK  ++S     + T  +    D +Y + + KS      E+K   VY
Sbjct: 73  VFFIGNAIVITLLAKSGRYSSSHEPSKTATEAASND-LYQEFLHKS------EKKKPVVY 132

Query: 128 QDK-QIIAEPIS--------SIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSE 187
             K + + +P          S  HK  E     ES +G  + K   R +SEK      S+
Sbjct: 133 ATKTEQLKKPSGGKRVSFGRSQSHKAFEAVKPLESTNGEKNMK---RYVSEKHMRVCDSD 192

Query: 188 KLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 231
           K      +K             +D +S+E+F+ KIEAFIA++K+ +++E   I+
Sbjct: 193 KKVVVRVKK------------PEDGMSNEQFRTKIEAFIARQKRIQKDEEHLII 221

The following BLAST results are available for this feature:

BLAST of Csor.00g023510.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g023510.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600586.1	9.94e-154	100.00	hypothetical protein SDJN03_05819, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031227.1	4.05e-153	99.57	hypothetical protein SDJN02_05267, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022942847.1	9.53e-152	98.28	uncharacterized protein LOC111447754 [Cucurbita moschata]	[more]
XP_022989466.1	7.19e-147	96.12	uncharacterized protein LOC111486513 [Cucurbita maxima]	[more]
XP_023544640.1	1.02e-146	96.12	uncharacterized protein LOC111804161 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g023510.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRE0	4.61e-152	98.28	uncharacterized protein LOC111447754 OS=Cucurbita moschata OX=3662 GN=LOC1114477...	[more]
A0A6J1JK52	3.48e-147	96.12	uncharacterized protein LOC111486513 OS=Cucurbita maxima OX=3661 GN=LOC111486513...	[more]
A0A6J1C5K3	1.77e-92	67.76	uncharacterized protein LOC111008461 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A5D3CYU3	2.84e-89	68.42	Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS...	[more]
A0A1S3BT40	2.84e-89	68.42	uncharacterized protein LOC103493205 OS=Cucumis melo OX=3656 GN=LOC103493205 PE=...	[more]

BLAST of Csor.00g023510.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66440.1	1.5e-23	35.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G34560.1	2.3e-08	29.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33640:SF3	TRNA-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6MTASE SUBUNIT	coord: 7..232
None	No IPR available	PANTHER	PTHR33640	TRANSMEMBRANE PROTEIN	coord: 7..232

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g023510	Csor.00g023510	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g023510.m01.CDS01	Csor.00g023510.m01.CDS01	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g023510.m01.stop_codon01	Csor.00g023510.m01.stop_codon01	stop_codon

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g023510.m01.single01	Csor.00g023510.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g023510.m01.start_codon01	Csor.00g023510.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g023510.m01	Csor.00g023510.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity