Csor.00g010360.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g010360.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Epidermal patterning factor-like protein
Location	Csor_Chr15: 8475394 .. 8476047 (-)
Sequence length	393
RNA-Seq Expression	Csor.00g010360.m01
Synteny	Csor.00g010360.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTCATATTGTTCTTAGACAACACGAGGCGCTGCTCATCTGCTCAATCTGGCCATGCACATATCGAGGTAAATTTATTTTAGTTCCAATATTATAAATGCATTATACTATGCCACCCCATCGCTAATTATGCAACCTAGGTGCTCAAGGTCGTTGGAGATCATGAACATCAAGAGTTGACCTTGCCAAGAGGAAGATTGGGTAGGCCGGGATCGTCACCGCCAAATTGCACCTCAAAGTGTGGGAAATGCATGCCCTGCACCCCGGTTCTTGTGTCAGTGCCACCGGAAACTCCGATCAGGGGTGATTATTACCCGTTAGTCTGGAGATGCAAATGTAAGGGCAAGCTCTACATTCCCTGATCGAAAAAGGCAAGCCCCTTGGAAAAAAGGCAAGCCCCCCGGATGTCGTTGCTGCTTACGTATGCTCTTATATGTTACATTCCCTGATCGAAAAAGGCAAGCCCCCCAGGTGTTGCTGTTGCTTACGTATGCTCTTATATGTTACATTCCCTGATCGAAAAAGGCAAGCCCCCCAGGTGTTGCCGTTGCTTACGTATGCTCTTATATGTTACATTCCCTGATCGAAAAAGGCAAGCCCCCTAGGTGTTGCCGTTGCTTACGTATGCTCTTATATGTTACATTCCCTGA

mRNA sequence

ATGATCTTCATATTGTTCTTAGACAACACGAGGCGCTGCTCATCTGCTCAATCTGGCCATGCACATATCGAGGTGCTCAAGGTCGTTGGAGATCATGAACATCAAGAGTTGACCTTGCCAAGAGGAAGATTGGGTAGGCCGGGATCGTCACCGCCAAATTGCACCTCAAAGTGTGGGAAATGCATGCCCTGCACCCCGGTTCTTGTGTCAGTGCCACCGGAAACTCCGATCAGGGGTGATTATTACCCGTTAGTCTGGAGATGCAAATGCAAGCCCCCCAGGTGTTGCTGTTGCTTACGTATGCTCTTATATGTTACATTCCCTGATCGAAAAAGGCAAGCCCCCCAGGTGTTGCCGTTGCTTACGTATGCTCTTATATGTTACATTCCCTGA

Coding sequence (CDS)

ATGATCTTCATATTGTTCTTAGACAACACGAGGCGCTGCTCATCTGCTCAATCTGGCCATGCACATATCGAGGTGCTCAAGGTCGTTGGAGATCATGAACATCAAGAGTTGACCTTGCCAAGAGGAAGATTGGGTAGGCCGGGATCGTCACCGCCAAATTGCACCTCAAAGTGTGGGAAATGCATGCCCTGCACCCCGGTTCTTGTGTCAGTGCCACCGGAAACTCCGATCAGGGGTGATTATTACCCGTTAGTCTGGAGATGCAAATGCAAGCCCCCCAGGTGTTGCTGTTGCTTACGTATGCTCTTATATGTTACATTCCCTGATCGAAAAAGGCAAGCCCCCCAGGTGTTGCCGTTGCTTACGTATGCTCTTATATGTTACATTCCCTGA

Protein sequence

MIFILFLDNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKCKPPRCCCCLRMLLYVTFPDRKRQAPQVLPLLTYALICYIP

Homology

[Close]

BLAST of Csor.00g010360.m01 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-13
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 48  GSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 91
           GSSPP C+SKCG+C PC PV V VPP TP+  +YYP  WRCKC
Sbjct: 107 GSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKC 149

[Close]

BLAST of Csor.00g010360.m01 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 43  RLGRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 91
           R G PGSSPP C SKCGKC PC PV V + P   +  +YYP  WRCKC
Sbjct: 55  RFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKC 102

[Close]

BLAST of Csor.00g010360.m01 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-09
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 43  RLGRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 91
           RLG PGS PP C  KCGKC PC  V V + P   +  +YYP  WRCKC
Sbjct: 53  RLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKC 100

[Close]

BLAST of Csor.00g010360.m01 vs. NCBI nr
Match: KAG6579356.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286 bits (731), Expect = 1.26e-97
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MIFILFLDNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGK 60
           MIFILFLDNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGK
Sbjct: 1   MIFILFLDNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGK 60

Query: 61  CMPCTPVLVSVPPETPIRGDYYPLVWRCKCKPPRCCCCLRMLLYVTFPDRKRQAPQVLPL 120
           CMPCTPVLVSVPPETPIRGDYYPLVWRCKCKPPRCCCCLRMLLYVTFPDRKRQAPQVLPL
Sbjct: 61  CMPCTPVLVSVPPETPIRGDYYPLVWRCKCKPPRCCCCLRMLLYVTFPDRKRQAPQVLPL 120

Query: 121 LTYALICYIP 130
           LTYALICYIP
Sbjct: 121 LTYALICYIP 130

[Close]

BLAST of Csor.00g010360.m01 vs. NCBI nr
Match: KAG6579357.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164 bits (416), Expect = 4.58e-50
Identity = 77/91 (84.62%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MIFILFLDNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGK 60
          MIFILF DNTRRCS AQS   +IEVLKVVGDHEHQ LTL RGRLGRPGSSPP+CTSKCGK
Sbjct: 1  MIFILFSDNTRRCSYAQSC-PYIEVLKVVGDHEHQNLTLSRGRLGRPGSSPPHCTSKCGK 60

Query: 61 CMPCTPVLVSVPPETPIRGDYYPLVWRCKCK 91
          C PCTPVLVSVPP T +RGDYYPLVWRC CK
Sbjct: 61 CTPCTPVLVSVPPGTSVRGDYYPLVWRCTCK 90

[Close]

BLAST of Csor.00g010360.m01 vs. NCBI nr
Match: KAG6583645.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (326), Expect = 3.74e-36
Identity = 62/90 (68.89%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1   MIFILFLDNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGK 60
           +IFIL  DNTRRCSS +SGHAHIE    + +HE QELTLPR  LG  GSSPPNCTSKCG 
Sbjct: 19  IIFILSSDNTRRCSSTESGHAHIE---PITNHEDQELTLPRRGLGGLGSSPPNCTSKCGS 78

Query: 61  CMPCTPVLVSVPPETPIRGDYYPLVWRCKC 90
           C PCT +LVSVPP  P  GD +P VWRCKC
Sbjct: 79  CTPCTTILVSVPPGPPGVGDDFPEVWRCKC 105

[Close]

BLAST of Csor.00g010360.m01 vs. NCBI nr
Match: KAG6583315.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (322), Expect = 1.52e-35
Identity = 61/90 (67.78%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1   MIFILFLDNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGK 60
           +IFIL  DNTRRCSSA+SGHAH +    + +HE QELTLPR  LG PGSSPPNC SKCG 
Sbjct: 19  IIFILSSDNTRRCSSAESGHAHTQ---PIANHEDQELTLPRRGLGGPGSSPPNCASKCGS 78

Query: 61  CMPCTPVLVSVPPETPIRGDYYPLVWRCKC 90
           C PCT VLVSV P  P  GD +P VWRCKC
Sbjct: 79  CTPCTTVLVSVTPGPPGIGDDFPEVWRCKC 105

[Close]

BLAST of Csor.00g010360.m01 vs. NCBI nr
Match: KAG6583317.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590332.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (298), Expect = 6.72e-32
Identity = 58/90 (64.44%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1   MIFILFLDNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGK 60
           +IFIL  DNTRRCSSA+SGHAH +    + +HE QELTL    L R GSSPPNC SKCG 
Sbjct: 19  IIFILSSDNTRRCSSAESGHAHTQ---PISNHEDQELTLSGRGLSRLGSSPPNCDSKCGS 78

Query: 61  CMPCTPVLVSVPPETPIRGDYYPLVWRCKC 90
           C PCT VLVSVPP     GD +P VWRCKC
Sbjct: 79  CTPCTTVLVSVPPGPSGVGDDFPKVWRCKC 105

[Close]

BLAST of Csor.00g010360.m01 vs. ExPASy TrEMBL
Match: A0A6J1G964 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1)

HSP 1 Score: 104 bits (259), Expect = 8.26e-26
Identity = 54/106 (50.94%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 8   DNTRRCSSAQSGHAHIEVLK----------------------VVGDHEHQEL-TLPRGRL 67
           DN R CSSA++GH +++ +                       VVGDHE QEL TL R  L
Sbjct: 41  DN-RCCSSAKAGHTNLQPITSSATWKLPADGRRVAQPATAEVVVGDHEDQELRTLARREL 100

Query: 68  GRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 90
           G PGSSPP CTS CGKC PCT V V VPP TP+  +YYP  WRCKC
Sbjct: 101 GGPGSSPPRCTSMCGKCTPCTAVHVPVPPGTPVTAEYYPEAWRCKC 145

[Close]

BLAST of Csor.00g010360.m01 vs. ExPASy TrEMBL
Match: A0A6J1G961 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1)

HSP 1 Score: 104 bits (259), Expect = 8.72e-26
Identity = 54/106 (50.94%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 8   DNTRRCSSAQSGHAHIEVLK----------------------VVGDHEHQEL-TLPRGRL 67
           DN R CSSA++GH +++ +                       VVGDHE QEL TL R  L
Sbjct: 43  DN-RCCSSAKAGHTNLQPITSSATWKLPADGRRVAQPATAEVVVGDHEDQELRTLARREL 102

Query: 68  GRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 90
           G PGSSPP CTS CGKC PCT V V VPP TP+  +YYP  WRCKC
Sbjct: 103 GGPGSSPPRCTSMCGKCTPCTAVHVPVPPGTPVTAEYYPEAWRCKC 147

[Close]

BLAST of Csor.00g010360.m01 vs. ExPASy TrEMBL
Match: A0A6J1KAS0 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492606 PE=3 SV=1)

HSP 1 Score: 102 bits (254), Expect = 4.45e-25
Identity = 53/106 (50.00%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 8   DNTRRCSSAQSGHAHIEVLK----------------------VVGDHEHQEL-TLPRGRL 67
           DN R CSSA++GH +++ +                       VVGDHE QEL TL R  L
Sbjct: 39  DN-RCCSSAKAGHTNLQPITSSATWKLPADGRRVAQPNAAEVVVGDHEDQELRTLARREL 98

Query: 68  GRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 90
           G PGSSPP C S CGKC PCT V V VPP TP+  +YYP  WRCKC
Sbjct: 99  GGPGSSPPRCASMCGKCTPCTAVHVPVPPGTPVTAEYYPEAWRCKC 143

[Close]

BLAST of Csor.00g010360.m01 vs. ExPASy TrEMBL
Match: A0A6J1KCE5 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492606 PE=3 SV=1)

HSP 1 Score: 102 bits (254), Expect = 4.70e-25
Identity = 53/106 (50.00%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 8   DNTRRCSSAQSGHAHIEVLK----------------------VVGDHEHQEL-TLPRGRL 67
           DN R CSSA++GH +++ +                       VVGDHE QEL TL R  L
Sbjct: 41  DN-RCCSSAKAGHTNLQPITSSATWKLPADGRRVAQPNAAEVVVGDHEDQELRTLARREL 100

Query: 68  GRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 90
           G PGSSPP C S CGKC PCT V V VPP TP+  +YYP  WRCKC
Sbjct: 101 GGPGSSPPRCASMCGKCTPCTAVHVPVPPGTPVTAEYYPEAWRCKC 145

[Close]

BLAST of Csor.00g010360.m01 vs. ExPASy TrEMBL
Match: A0A0A0LXR9 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G533610 PE=3 SV=1)

HSP 1 Score: 100 bits (248), Expect = 3.12e-24
Identity = 46/83 (55.42%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 8   DNTRRCSSAQSGHAHIEVLKVVGDHEHQELTLPRGRLGRPGSSPPNCTSKCGKCMPCTPV 67
           DNTR CS  +S    I        H+ Q + LPR  LG PGSSPP C SKCGKC PCT V
Sbjct: 56  DNTRSCSFGKSVQYSIIANCEDDHHQDQFMRLPRRGLGGPGSSPPRCASKCGKCTPCTAV 115

Query: 68  LVSVPPETPIRGDYYPLVWRCKC 90
            V VPP TP+  +YYP  WRCKC
Sbjct: 116 HVPVPPGTPVTAEYYPEAWRCKC 138

[Close]

BLAST of Csor.00g010360.m01 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-14
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 48  GSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 91
           GSSPP C+SKCG+C PC PV V VPP TP+  +YYP  WRCKC
Sbjct: 181 GSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKC 223

[Close]

BLAST of Csor.00g010360.m01 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-14
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 48  GSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 91
           GSSPP C+SKCG+C PC PV V VPP TP+  +YYP  WRCKC
Sbjct: 107 GSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKC 149

[Close]

BLAST of Csor.00g010360.m01 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-13
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 43  RLGRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 91
           R G PGSSPP C SKCGKC PC PV V + P   +  +YYP  WRCKC
Sbjct: 55  RFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKC 102

[Close]

BLAST of Csor.00g010360.m01 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-10
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 43  RLGRPGSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKC 91
           RLG PGS PP C  KCGKC PC  V V + P   +  +YYP  WRCKC
Sbjct: 53  RLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKC 100

[Close]

BLAST of Csor.00g010360.m01 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). )

HSP 1 Score: 42.0 bits (97), Expect = 4.4e-04
Identity = 19/44 (43.18%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 48  GSSPPNCTSKCGKCMPCTPVLVSVPPETPIRGDYYPLVWRCKCK 92
           GSS P+C++ CG C PC  V++S    T    +  PLV++C CK
Sbjct: 122 GSSIPDCSNACGPCKPCKLVVIS---STCSASEACPLVYKCLCK 162

The following BLAST results are available for this feature:

BLAST of Csor.00g010360.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PEY6	5.0e-13	67.44	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	1.2e-11	60.42	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	4.4e-09	56.25	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Csor.00g010360.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579356.1	1.26e-97	100.00	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6579357.1	4.58e-50	84.62	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583645.1	3.74e-36	68.89	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583315.1	1.52e-35	67.78	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583317.1	6.72e-32	64.44	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Csor.00g010360.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G964	8.26e-26	50.94	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G961	8.72e-26	50.94	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KAS0	4.45e-25	50.00	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1KCE5	4.70e-25	50.00	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A0A0LXR9	3.12e-24	55.42	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G533...	[more]

BLAST of Csor.00g010360.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30370.1	3.6e-14	67.44	allergen-related	[more]
AT2G30370.2	3.6e-14	67.44	allergen-related	[more]
AT4G14723.1	8.8e-13	60.42	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	3.1e-10	56.25	allergen-related	[more]
AT1G71866.1	4.4e-04	43.18	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Put...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 46..92 e-value: 3.2E-15 score: 55.9
None	No IPR available	PANTHER	PTHR33109:SF4	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 6	coord: 33..90
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 33..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g010360	Csor.00g010360	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g010360.m01.CDS04	Csor.00g010360.m01.CDS04	CDS
Csor.00g010360.m01.CDS03	Csor.00g010360.m01.CDS03	CDS
Csor.00g010360.m01.CDS02	Csor.00g010360.m01.CDS02	CDS
Csor.00g010360.m01.CDS01	Csor.00g010360.m01.CDS01	CDS

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g010360.m01.terminal01	Csor.00g010360.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g010360.m01.stop_codon01	Csor.00g010360.m01.stop_codon01	stop_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g010360.m01.intron03	Csor.00g010360.m01.intron03	intron
Csor.00g010360.m01.intron02	Csor.00g010360.m01.intron02	intron
Csor.00g010360.m01.intron01	Csor.00g010360.m01.intron01	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g010360.m01.internal02	Csor.00g010360.m01.internal02	internal
Csor.00g010360.m01.internal01	Csor.00g010360.m01.internal01	internal

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g010360.m01.initial01	Csor.00g010360.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g010360.m01.start_codon01	Csor.00g010360.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g010360.m01	Csor.00g010360.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development