Csor.00g007840.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGCTTCCGGTGAAGAACTTTCAGATTTGGAGGTTGAGAATGAAGCGAATCATTGCGGGTTTGAGGAAGAACCTGAAACTATTGCTATAATGGATGCCGTGAAAGTTTTGTTGCAGGGTTTAGGGGAAGATATCAACAGAGAGGGTATCAGAAAGACCCCTTTCCGTGTGGCCAAGGCTCTTAGAGAAGGAACAAGAGGTGAGAATTTCCTTATTTCATAGCCTTCGTTTTAGTAGTGCAAGCCTCTGAGAGGCATTAGTTTATTGAGAATTGTGAGTTTTGTCTGTTGTTTATGAGTTTGTATTGGACGGCCCAAGTCTATCGTTAACAGATATTGTCTTTTTTGGGCTTTTCCTTATGAGCTTCCCTTCCAGATTTTATAATGCGTCCTTTAGGGAGAGGTTTCCACGCCCTTATGAGAAATGTTTGGTTCTTCTCTTTAACTAACGTGTGATCTCACATTAGGAAAGTTTGAGATATTGGTTTTGAGAATTCTCCTTATTTTGTCTCATTTTTACTGCGTTGAATTTGTTCTGCTATGCACGACTTGGCATATATCACCTGGATGGTTTCATACATCATGTTTTGGTTCTAAAGGACTCGTGAAATCGGATAATTGTTGTAATGAAAATATTCATCTCTTCATTCATATACTTCACTGCAATTTGTATAACTGAATACAAATTTATTTCAGGCTACCGACAAACAGCGAAGGACATCATTCAAAGTGCTTTGTTTCCTGAAGCTGGACTACATAATGGTGTTGGTCAGGCTGGAGGTGCAGGTGGGATTGTGATTGTTCGAGATCTTGACTTCTTCTCGTACTGCGAGTCATGCTTGCTTCCATTTCAAGTGAAATGTCATGTGGGTTACGTTCCATCTGGTCAGCGAGTCGTAGGGCTGAGCAAGCTCTCTCGAGTATCAGACGTGTTTGCGAAGCGACTTCAAAAGCCTCAACGTCTGGCTGATCAAATTTGTTCAGCTCTACACCATGCTATCAAGCCAGGAGGTGTTGCTGTTGTACTTAATTGTATGCACATCCATTTCCCAGCTTGGAGTCGGTCTTTCTCGATTCAAAATCCTCGGGATGGATCAAGTTGCACGTTCAATCTGGTTCCGGAGCTTTTGAAAGCCAAGATGCTGATGCCTGGATGGACTTCTTCAGCCTTTTAA ATGGACGCTTCCGGTGAAGAACTTTCAGATTTGGAGGTTGAGAATGAAGCGAATCATTGCGGGTTTGAGGAAGAACCTGAAACTATTGCTATAATGGATGCCGTGAAAGTTTTGTTGCAGGGTTTAGGGGAAGATATCAACAGAGAGGGTATCAGAAAGACCCCTTTCCGTGTGGCCAAGGCTCTTAGAGAAGGAACAAGAGGCTACCGACAAACAGCGAAGGACATCATTCAAAGTGCTTTGTTTCCTGAAGCTGGACTACATAATGGTGTTGGTCAGGCTGGAGGTGCAGGTGGGATTGTGATTGTTCGAGATCTTGACTTCTTCTCGTACTGCGAGTCATGCTTGCTTCCATTTCAAGTGAAATGTCATGTGGGTTACGTTCCATCTGGTCAGCGAGTCGTAGGGCTGAGCAAGCTCTCTCGAGTATCAGACGTGTTTGCGAAGCGACTTCAAAAGCCTCAACGTCTGGCTGATCAAATTTGTTCAGCTCTACACCATGCTATCAAGCCAGGAGGTGTTGCTGTTGTACTTAATTGTATGCACATCCATTTCCCAGCTTGGAGTCGGTCTTTCTCGATTCAAAATCCTCGGGATGGATCAAGTTGCACGTTCAATCTGGTTCCGGAGCTTTTGAAAGCCAAGATGCTGATGCCTGGATGGACTTCTTCAGCCTTTTAA ATGGACGCTTCCGGTGAAGAACTTTCAGATTTGGAGGTTGAGAATGAAGCGAATCATTGCGGGTTTGAGGAAGAACCTGAAACTATTGCTATAATGGATGCCGTGAAAGTTTTGTTGCAGGGTTTAGGGGAAGATATCAACAGAGAGGGTATCAGAAAGACCCCTTTCCGTGTGGCCAAGGCTCTTAGAGAAGGAACAAGAGGCTACCGACAAACAGCGAAGGACATCATTCAAAGTGCTTTGTTTCCTGAAGCTGGACTACATAATGGTGTTGGTCAGGCTGGAGGTGCAGGTGGGATTGTGATTGTTCGAGATCTTGACTTCTTCTCGTACTGCGAGTCATGCTTGCTTCCATTTCAAGTGAAATGTCATGTGGGTTACGTTCCATCTGGTCAGCGAGTCGTAGGGCTGAGCAAGCTCTCTCGAGTATCAGACGTGTTTGCGAAGCGACTTCAAAAGCCTCAACGTCTGGCTGATCAAATTTGTTCAGCTCTACACCATGCTATCAAGCCAGGAGGTGTTGCTGTTGTACTTAATTGTATGCACATCCATTTCCCAGCTTGGAGTCGGTCTTTCTCGATTCAAAATCCTCGGGATGGATCAAGTTGCACGTTCAATCTGGTTCCGGAGCTTTTGAAAGCCAAGATGCTGATGCCTGGATGGACTTCTTCAGCCTTTTAA MDASGEELSDLEVENEANHCGFEEEPETIAIMDAVKVLLQGLGEDINREGIRKTPFRVAKALREGTRGYRQTAKDIIQSALFPEAGLHNGVGQAGGAGGIVIVRDLDFFSYCESCLLPFQVKCHVGYVPSGQRVVGLSKLSRVSDVFAKRLQKPQRLADQICSALHHAIKPGGVAVVLNCMHIHFPAWSRSFSIQNPRDGSSCTFNLVPELLKAKMLMPGWTSSAF Homology
BLAST of Csor.00g007840.m01 vs. ExPASy Swiss-Prot
Match: Q8VYU3 (GTP cyclohydrolase 1 OS=Solanum lycopersicum OX=4081 GN=GCH1 PE=1 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 5.9e-78 Identity = 141/193 (73.06%), Postives = 160/193 (82.90%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy Swiss-Prot
Match: Q9SFV7 (GTP cyclohydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=GCH1 PE=1 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 7.2e-76 Identity = 134/178 (75.28%), Postives = 152/178 (85.39%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy Swiss-Prot
Match: Q55759 (GTP cyclohydrolase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=folE PE=3 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 6.4e-32 Identity = 76/182 (41.76%), Postives = 113/182 (62.09%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy Swiss-Prot
Match: Q94465 (GTP cyclohydrolase 1 OS=Dictyostelium discoideum OX=44689 GN=gchA PE=1 SV=2) HSP 1 Score: 136.0 bits (341), Expect = 5.4e-31 Identity = 69/153 (45.10%), Postives = 99/153 (64.71%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy Swiss-Prot
Match: Q7NK98 (GTP cyclohydrolase 1 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=folE PE=3 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30 Identity = 69/153 (45.10%), Postives = 101/153 (66.01%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. NCBI nr
Match: KAG6593008.1 (GTP cyclohydrolase 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 458 bits (1178), Expect = 1.28e-162 Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. NCBI nr
Match: XP_022959896.1 (GTP cyclohydrolase 1 isoform X2 [Cucurbita moschata]) HSP 1 Score: 376 bits (965), Expect = 1.13e-127 Identity = 187/192 (97.40%), Postives = 188/192 (97.92%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. NCBI nr
Match: KAG7025418.1 (GTP cyclohydrolase 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 376 bits (965), Expect = 1.27e-126 Identity = 187/192 (97.40%), Postives = 188/192 (97.92%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. NCBI nr
Match: XP_022959895.1 (GTP cyclohydrolase 1 isoform X1 [Cucurbita moschata]) HSP 1 Score: 376 bits (965), Expect = 1.27e-126 Identity = 187/192 (97.40%), Postives = 188/192 (97.92%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. NCBI nr
Match: XP_023515144.1 (GTP cyclohydrolase 1 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 372 bits (956), Expect = 2.63e-126 Identity = 185/192 (96.35%), Postives = 187/192 (97.40%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy TrEMBL
Match: A0A6J1H654 (GTP cyclohydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111460815 PE=3 SV=1) HSP 1 Score: 376 bits (965), Expect = 5.47e-128 Identity = 187/192 (97.40%), Postives = 188/192 (97.92%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy TrEMBL
Match: A0A6J1H7L3 (GTP cyclohydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111460815 PE=3 SV=1) HSP 1 Score: 376 bits (965), Expect = 6.13e-127 Identity = 187/192 (97.40%), Postives = 188/192 (97.92%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy TrEMBL
Match: A0A6J1KR83 (GTP cyclohydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111497938 PE=3 SV=1) HSP 1 Score: 368 bits (945), Expect = 5.95e-125 Identity = 183/192 (95.31%), Postives = 185/192 (96.35%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy TrEMBL
Match: A0A6J1KVE1 (GTP cyclohydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111497938 PE=3 SV=1) HSP 1 Score: 368 bits (945), Expect = 6.57e-124 Identity = 183/192 (95.31%), Postives = 185/192 (96.35%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. ExPASy TrEMBL
Match: A0A6J1DC24 (GTP cyclohydrolase 1 OS=Momordica charantia OX=3673 GN=LOC111019654 PE=3 SV=1) HSP 1 Score: 345 bits (885), Expect = 1.09e-114 Identity = 172/198 (86.87%), Postives = 180/198 (90.91%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. TAIR 10
Match: AT3G07270.1 (GTP cyclohydrolase I ) HSP 1 Score: 285.0 bits (728), Expect = 5.1e-77 Identity = 134/178 (75.28%), Postives = 152/178 (85.39%), Query Frame = 0
BLAST of Csor.00g007840.m01 vs. TAIR 10
Match: AT3G07270.2 (GTP cyclohydrolase I ) HSP 1 Score: 285.0 bits (728), Expect = 5.1e-77 Identity = 134/178 (75.28%), Postives = 152/178 (85.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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