CsaV3_7G023980.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G023980.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 13005326 .. 13005993 (-)
Sequence length474
RNA-Seq ExpressionCsaV3_7G023980.1
SyntenyCsaV3_7G023980.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCGTAGAAAATAGGAGAGCCAAGTCATTTTGAGCTAGAATGCATCAAGTTCCTTCGGTATCAAAACCTTAGTGGGGAACTCTCGATATTCAACATAAGCCACAATACAATTGCCCGTAGAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGTTCTTTCGATATTAGAACTACGTGAAGAACTTCGACTCTTGACCGAAGCTACATTACTATCGCTCGTAGAAATTAGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

mRNA sequence

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

Coding sequence (CDS)

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

Protein sequence

MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS*
Homology
[Close]
BLAST of CsaV3_7G023980.1 vs. NCBI nr
Match: KGN44398.1 (hypothetical protein Csa_015881 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 4.3e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 

Query: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60
           MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR
Sbjct: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60

Query: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120
           LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV
Sbjct: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120

Query: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS
Sbjct: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 157

[Close]
BLAST of CsaV3_7G023980.1 vs. NCBI nr
Match: KGN44393.1 (hypothetical protein Csa_016831 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-09
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 0 

Query: 57  GNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATL 116
           G S +     LQ PVE    K  QARMR      +  +A   FDI K V N+RLL EATL
Sbjct: 19  GRSHITIAPTLQSPVESSIIKTLQARMR-----QVPSNASSSFDIRKYVENTRLLVEATL 78

Query: 117 QLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           Q  VE RR +P RARM +V  + +    TLDS+LK QYN S
Sbjct: 79  QSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCS 114

[Close]
BLAST of CsaV3_7G023980.1 vs. NCBI nr
Match: KGN44400.1 (hypothetical protein Csa_016860 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-04
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 81  ARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHVESRRDEPFRARMSQVHFVSE 140
           A  ++ESQAAL  +A G F I  C+GNSRLL EATL   +E RR +   AR  QV  +SE
Sbjct: 25  AGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATLHSPIECRRAKLLWARKCQVLSISE 84

[Close]
BLAST of CsaV3_7G023980.1 vs. ExPASy TrEMBL
Match: A0A0A0K4I4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279800 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.1e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 

Query: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60
           MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR
Sbjct: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60

Query: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120
           LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV
Sbjct: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120

Query: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS
Sbjct: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 157

[Close]
BLAST of CsaV3_7G023980.1 vs. ExPASy TrEMBL
Match: A0A0A0K4H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279750 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 0 

Query: 57  GNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATL 116
           G S +     LQ PVE    K  QARMR      +  +A   FDI K V N+RLL EATL
Sbjct: 19  GRSHITIAPTLQSPVESSIIKTLQARMR-----QVPSNASSSFDIRKYVENTRLLVEATL 78

Query: 117 QLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           Q  VE RR +P RARM +V  + +    TLDS+LK QYN S
Sbjct: 79  QSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCS 114

[Close]
BLAST of CsaV3_7G023980.1 vs. ExPASy TrEMBL
Match: A0A0A0K3X8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279820 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-04
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 81  ARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHVESRRDEPFRARMSQVHFVSE 140
           A  ++ESQAAL  +A G F I  C+GNSRLL EATL   +E RR +   AR  QV  +SE
Sbjct: 25  AGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATLHSPIECRRAKLLWARKCQVLSISE 84

The following BLAST results are available for this feature:
BLAST of CsaV3_7G023980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44398.14.3e-80100.00hypothetical protein Csa_015881 [Cucumis sativus][more]
KGN44393.13.0e-0947.52hypothetical protein Csa_016831 [Cucumis sativus][more]
KGN44400.16.5e-0451.67hypothetical protein Csa_016860 [Cucumis sativus][more]
BLAST of CsaV3_7G023980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023980.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4I42.1e-80100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279800 PE=4 SV=1[more]
A0A0A0K4H81.5e-0947.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279750 PE=4 SV=1[more]
A0A0A0K3X83.1e-0451.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279820 PE=4 SV=1[more]
BLAST of CsaV3_7G023980.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G023980CsaV3_7G023980gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G023980.1.exon3CsaV3_7G023980.1.exon3exon
CsaV3_7G023980.1.exon2CsaV3_7G023980.1.exon2exon
CsaV3_7G023980.1.exon1CsaV3_7G023980.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G023980.1.cds3CsaV3_7G023980.1.cds3CDS
CsaV3_7G023980.1.cds2CsaV3_7G023980.1.cds2CDS
CsaV3_7G023980.1.cds1CsaV3_7G023980.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G023980.1CsaV3_7G023980.1-proteinpolypeptide