CsaV3_7G022410.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G022410.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 11313369 .. 11321670 (-)
Sequence length336
RNA-Seq ExpressionCsaV3_7G022410.1
SyntenyCsaV3_7G022410.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTGAGTACACCAGAGTACGTACACCTTCACTTTTGACCGTCTGTTGTCCACTCTGTAGAGGTCAGGCTTCATTCCTCTAAAACTTCAATTGTTGTTCATATATACTTTGGGCTTCCATTAAAAATACTTTTGCTCATTTATTAAACTCTATTTTGAGAAGGACTCGAATTTTGGATTTTGTGAAGCATTGTGGGTGGGTGATTAAGCTCTCTTCTGTAAGCCATTTTGAACAACAACATTTTCTAGCTCTTATGTGAAGCATGATGAGATAGATTTTGAGTTAATTAACATGTTATTTGTGAAGTTTTGAAATGATTTTAGATTTAGATAATTTTTAACAAAAAGTAATGCAAAAACCAGCCTATATTCAGTCAATTTAAATAACTCTTTTGTTAGCAAAAATCCTAATTCAATGACAAATACATCTCCAATCTTGTCCTTTAACAAAAGGTCAAAACACACATGAATCCCCACTCTAAAAAAAAGAGAAAATCCTCAAATCATAGAACAAACAAACAAATAGAAACAAAGACAATATTCTGAAGATCATAAAAAAGCCACAATGGAGTTATGTATAAAGTAGAACATAGAATTTTTCATTCAAACCTTTCTTCAAACACTTCAAAGCATTTCCCCCTTTTTTTTTTCATGTTAATGAACAACCGAAATAAAAGTTTTAAGCCGTCATATACTTTTCAATCATATGGCCTTTTCATTTGGATCAACTCAAACTGGAAAATGACATAAGAAAATTGAGAGTGGTTATGGTATCTTTTATAGGAAGAAGATTTAGATATGGAAAAAAGGACGAAGATAGAAGAAGAGCGAAGAAGAAAGTGTGAACTTTTGAGTTCAAGATAAAATGAACTTTTATTCAATTATGACCATGTGGTGTGTTCATCATTAACAAGATCATGATATTGTTATTTAGCTTTATTCAATTATGATTTTTTTTTTTTGTGTACACATGGGGATTCATGGTGGTTTTAGTTTAATGGAAAGTAAAATTTACTATCCGCACATGGGTTTTAATTACTTCATAAATTTGTTCAATCAACATGACGAGAACAAAAAAAGCAGAAAAATTGATTGAGCTTTTCTTTAGATGTAAAATGAATACATAATATATGTTTGCCAATAGATCTGTTGTTTCAGTTTTTGAGCGTGCAGTTTTTCAGCGTTTAGCAAATGACTGGTTCTGCAGCAGAAACCAGTGCATTGTTATCACGGAGAGCATGACTCAAGTCTTACAAACTTGAAATTTCTCATATTTAATGCTAACCTTTTTTTCGTAGGGACGTGGATATCCAGATGTTTCCACTAGAAGGTAAAGAACATGTGCACATAAACATGCTAATTATCTCAATTTTTAACTGATGATGTGAGTTCTTGAAATATGCACACATGTATTGATCAGGTTCTTACGGCTTCTTGTTGATGTTTTGGCATTGCTTGCATTTTGTTTGGTAGATTGTGATCCATATGGTTTTGACATTTTGACGACATATCTTTTCGGTTCTATGGTTACGCTCCTCAAATTAAACAATTATTTACTCATTTTCCCTTCAATGTTTTCGACCCATTTCCTTTTCAAATGTTATTTTCTATAGTTTTGATCAGTTGAAGGTCTTATATAAATTTAAGAAACAACTGTTTTTTCATTGTTTTAAAACAAAAACGAAAAACCAAATAGTTACAAATGGAAAGTATTTTTTGTTGATGTAATGTTTATATTGAAAGAACGATTGATATCCCAAATAGATGGACCTAAGTTTTTTATAGTTGAATGTTATTATTCTGAAAGAGTTAATATTGGTTTCTACTGTAGTTCAAAACTCCAAATGCAAAGTTTTGGATTTTCTTTGACATTTGTTGTATGCTATTGTAGTTCAAAACTCTCTATTGTAGTTTACAAAGGGTAACTTGCATTTTTATTAGGTTTTGCACGAATATGATCTACTATAGTGGTGAAGCTACCAAGTAAGTGATTACATTTACACAACAATTATGAGATTCTTTTTACAACAAGTTATTGCTATGTTTAATGTTACTCTTATGAGTTTTTATTGATATGTTTAATGTTACTTTGTTGCTTCATATCCAAGTTGTTGACTTATCTCTCTCTATTGTTCGTCCAAATTCATATTCGTTTTAGTTTTGTTATGAAACAGAAGTTTTACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTTGTTTGGTTCATAAAGCTAAGGTTTGTTCAATTAGTTATGAATGTTGAGATATTGTTCTTGTAGGATCGATTGATTTTGGATGATTATCTGCTTCTGGGTTCTTATAAAATGATTTGTACTATTCAAAAATGGTTTTTAATCCTCTAGAAATCACTCTACAACATTTTTTTTTTTTTTTGTGGTTTAAACAGCTAGATTGAGATATTGAGAGTGTTGTTTTTGGTGACAGATTAGAGCGATTTTCAGGTGAGTTTCAGTTGTGTGTGTTTTGTTTTAGCCGTGGATTCTTCTAGGATTCTTCTACTATTTTACTTGACGGATAAATAGTGTCAATTATACAATTTTACTTGTCATATAAATAGTGTGAAGTATATTATTTTACTTGATGGATAAATAATGTCAAGTATATTATCTTACTTGACGTCTAAATAGTGTCAAGTATACGACTTTACGTGACACGTAATAAAAGTCAAGTGCGATAGATTACTTGACATTAAAACCGTGTCAAGTAAATGTATACTTGACGATTTTTTAGTGTCAAGTAATGTGACTATACTTGACAGTCGATTACTTGACGCTTTTAAAAATGTCAAATATACGTTTACTTGACATTGTATTAACGTCAAATAAACCAATTTTTTTAGTAGCACACCTAGAAGAAGATGAAGATGAATCCTTCCAGCTATGACATATGAGAGAAGATGAAGATGAATTCTTTTCGGTTGCAGCACCTGGAAGAAGATGAAGATGAATCCTCTTCGGTTGCGACACCTGAAAGAAGATGAAGGTGAATTTTCTCTGCTGCGACTCTTAGGAGAAGATGAAGATGAATCTTCTCGATTGTGATTCCTAGGAGAAAATGAAGATGAATCCTCTCGGTTGCAACACATGGGAGAAGACAAAGATGAATCTTCTCACTTGCGACACCCTAGAGCAGATGAAGATGAATCCTCTTCGATTGCAGCACTTGAGAGAAGATGAAGATGAATCCTCTTCGATTGCTACACCTCAGAGAAGATGAAAATGAATCTTATCGGCTGCGACTCCTAGGAGAAGCTGAAGATGAATCCTCTCGGTTGCAACACATAAGGGAAGACAAAGATGAATCATCTCACTTGTGACACCTTAGAGCAGATGAAGATGAATCCTCTTCGGTTCCAACACCTAAGAGAAGATGAAGATGAATCCTCTCACTTGTGACACCTTAGAGCAGATGAAGATGAATCCTCTTCGGTTGCAACACTTGGGAGAATATGAAGATGAATTATCTTCAGTTGCAACACCTGGGAGAAGATGAAGATGAATCTTCTCGGTTGCGGCTCCTAGGAGAAGATGAAGATGAATCCTCTCGGTTGCAACACATTGAAGATGAAGCAGAGGCTAAAGCTTTAGCGTTGTATGCATCTTCTTGGAGAGGCAGAAGCGGTGTTATACCATTGTCGTCATCTTGAAGAGGTGAAGGTGGAGCTGCATGCACTATATATCGTCATCCTTTTGGAGCTGCCCAATCTTCTTCCTCTTAGAGTTGTATCATCGTCATCCTCTCGAAGAGGTGGAGCTGCAACGTCGATGAAGCCTTCAAGCTTGAATATAAGGAATCATTGATGAAGTCTTTGAGCTTAAATATGAGGAATCATCAATGAAACCTTCAAGCTTGAATATGAAGGATCATCAATGAAGCATTTGAACATGCACTCAACTTGTATATAGTCTTTGCACAAATTGTGTACATCTTTAGTTTATTGCATCACATCGTTACTAGGGATGAACATCTTGAATTTAGGAATTTGCCCCTAATTTGTCATGATTCCGTAGTAGAGATAAACATCCTTTGAAGAAAAGAATCAAGCCATGACGTAGTTCAATTTTTTTTTTTTTTGTTGGACTGAACTTAAAGTTTCCTTTAAGCTGCCTACGTATCCCTTTCTAATAGGGGGATCAAGTTATAACGTAGTTTAAGTTTTTTTTTTTTATTCACCTTTTAAGCTCTTGTGGGCTAGGAGCACCATGTAGATTAGGCTATTGTGATAAGGAGCTTCGCATATTTAGCTACTCGTATTTCCATCAAGGACTTGTTCACCTTCTTTATTTGTAGAATTGGTGAATATAATAACTCTTGGCTTCACTGTCAAGGAACCTTCTGTATTTATGTCAACAGACAACCTCCTCTTCATGCGTGATGGGACACAACTGTGAATCTCTGCGTTCTTGTTTTCTTCATGAAATGGTTTTGCCTTCAAAGTTTCCATCTCTCTTTCGTGTTGATCGTTTGAAATCTTTAGACAATCAAAAGCAGATGTTGAAGGTCAATCTTTCTTTGATGTGAAGATACTTAGCCTTTTGAAAGCTGAAGTTCGAGTGGAAGTAGTCGTTGGACATTGGTTTTCTTCTTCTTTCGTGGCCATACTCAATCTTTGAAATACTGAAGATCGAGTAGCTGAAGGCTTGATACGATCAAAGACAGAAGTCCTTTGCTTAATTTATTTTGAATTGTCGATTTCTTCAAAAGATGCATAATTGTTGTCGGCTTCGTCTATGCTGACAACATGACATGTAGCTACTTCTAATATTTCCTTAGGATGATCATCAAGGAAACTTCTTGAGAGGAATTCTGTCAAAGTTATTGACCATCGAGGTCGGAAAAAGTCCTCATCTTTTCCTTTGATAGGCTTAGGCTTCCACATCTTCTTGTTTCTTTTCTCCTTTTTATGAGAGCTGCTTTCTTTTCCATGCTTCTGATGGAAGTGCGACTTCGTTTGAATGAAATTTGGTTATCTCCCTCTTTTACGAGCCACGACTATCCATCCTTCGCAATCATCTTCAACAAACTTTTCTTTGTTTTGAGAGTCTTTTGTCACGATCTTTTGTTAGAATCGAACAAGTATGGGTTCGAGAGTCCCAAACTGAATCAAGTTTTTTCATTGATCATAAGGCAACGTTCATGGCAGAGCACTTGAAGTCGTCTCAACTGCAACATGATTTGTCTGAGCTACTTCATCCATATCTAACTCGATTTTCTTTTCACGAGCCAACTTTAGAATAAGCTCCTTCAACATGAAACATTTTCCAACAGGGTGACTAATGACCCGATGGTACTTACAATAGTTAGGATCATCTACTTTTCCTGCTTGTTTCAGTCGTTTGCATTTTGGCAGCTGAATAAGTTGTTTGTTTAGCAGCTGCTCTAACATGTCTGCAACATCAGAGTTGGGAAATGGATAAACTTTTTCCTGCCTTTCTTTGAGTGTTGGCCAATGCTTCTCGTCACCATCATGCTTTCTTTCAATTTTTGTTTCTTTTCTTTTGGAGAAAGATTTCAATGGAGACTCCTGAACAACCATAGACAAATTAATGACACTATTTGTGATCTTTGTAGTGTCGTTGATTTTATTATTCTCCTTTTTTACTTCAGAGATTAAGAAATCTTTAGTTCCCCTATTATTGATGCTCAATTTCATGTCGTTGGCACGAGTTGCTAATTCTTCAAACGTATGGGGTTTTATTCCTTGCAAAATATAAAGAAGTTTCCAATGCATGCCTTGGGTGCACATCTCCACTACAAACAGTTTTGTGAGCTTATCTTTGCAATTCAAGCTTAGAGTTCTCCATCAGTTTATGTAGTCAATGACTGGCTCTCCCTTTCGTTGTCTCGTGTTTGTAAGCTCCATCATGCTTACAGTGCGTCTGGTGCTGAAGAAACGGTTGAGGAATTCCTTTCAGTTGTTTCTAACTGTCAATGACTTCTGGCTCCAGATCAGTATACCACTCGAAAGCATTTCCTTTTAAGCTTCGAACGAACTGCCTGACTAGTTGGTCTCCTCTTGATCCTGCGTTCTCACATGTTTCAACAAAGTGGACAAATGTGTTGCTTTGGATTGCCATTTCCGTCGAATTGCTGGAATTTTGGGGACTGGTATCCAAGCAGCATTCTCAAGTTGTCAATTCTTTTGGTGTACAACTTAGAGCTTAGAGTACATGAAAGAAGTCTGAGATGAGCCTCCATACTGAGCTTTGATGGAGTTTGTTATCATATCTTGTAATTGTTGAACTGAGAGAGAAGCCACAGAAGTTGATTATTGTTGTGGTTGATTTTCTTGCATCACGTTCTTCCCTTTGTCACCAGCTTTAACAACAGGAGTTTGACTCGATTCAGCCGTTTCACGAGTCTGCATCTGCTATTTTAAAACTGCGATTTCGTGGTCTTGTTCATCAACAACCTTCATCTGGAGATTAATTTTTCTCTCCATCTTCGCCATGGTAGCCTCAACTGTTACATAAACCATTATGACAGACATCACATCAGGGTGTGCTTCTTTTTGTGACCTACTAGAGGCAAAATCAGAATCATTATATAGAGGATTTTCCTGGATGACAATTCCAGCTTTAGGAGATTCCATTAATTGCTTCAGGATGCTTTGCGCGATGGTGGAACCTTGATCTTGCTCTTAGACGATTCCCTTAGAACGACTACAAGTGACATATGCAGCTTTCTTAGATGCCATTAATTTGCTTGTAGATCTAGATGACGAGAGAGAGATTGGAGGTAGAGATTGTCCCATTGAGCGTGCCAATTTGTTTACACGAGATTTTCGAAGAAATTTAATTCCATAGATTTTCGAAGAAACTTAATTCGTAGATTTGAACTTGGAGTTGATAGTTGTATCTTTGTTGATTTCATGCGATGCGGTTCAATTTCTAGAATTTGATCCTCTGATTCTCTCTCGACTAGATGCTTACGCTTGATTTGGAGGAAGCGGAGCACGTGATGTTTTTGAAGTTTGTTGAACGTCTACGCTTGATTTGGAGAAGCCGAGCACGTGATGTCCTTCAAATTGGTTGAATTTCTACGCTTGATTTGAGGAAGCGGAACATGTGAGGTTCTTGAAGTTGGAGTCTTGAAAGAAAGTTTGTATCTTCAAAGGAGCTTCAATCTTCGATCTTCGAGAAAAATTGGAGCTTCAATCTTCGAGGAAAATTGGAGTCTTTGAAGAAATTTTGTATCTTCAAAGGAGCTTCAATCTTCGAGGATAGTCGACTTCAGGACTTAGGGAGTCTTCTAGTTATTGAGAGAATTCTCTCTGGATTTTCTGAAGTCAAAAATTTCCAACCCCTACAAATGAGGAGGAGAATTTCTCTATTTATAGAGTTCACTAGTGGGCTATATGGACTTGAACATGGTTGGTCCATGGACCAGACTCATGGGTTCAACCATATATATTTATGTTTTATTTAGTCTTTGAGCTCAATTAAGTTTATTTTTGGGCTTAATTGAACTTAGTTAAGTAAATAATATTTAATTGAACCAAAATGATTAACTTAATCCAACGATTAAGATGAAAACATGTGGCACTATTAGAATGATCAATTTATGTTTTTCAATTCTTTAATTTGGGGCACATGTCAATTTTAATTAGTCACAAATTTAATTATTTGTACTTTTCATCATTAACTTAATAAATGATCTGACAATTTGTGACTGATCTCAAAATTTCTTATTCAACAATAGCAACATATAAAAAAAATTGTAAATATACCAAAACTATTGCCGATAGACTCGTATGGTCTATCACTAATAGACCAATTTTTACAACATAATCTATTGATGATAGACTTCATTGATAGGATTTGACCAATTTTGCTATGTTTGCAAATTTTTTAAAATGTTGTTATATACTTAATTATTTTGAATCTAATGGTTAAATTTGCACTACCAAAAAAGAAATTGTTTTTAGAAAACTTAATATTATTTAAACAATCTGCAATGCAATTAATTTTTACCGGAAATGGGAGGAGTTTGTAGACGACAAGCAGCAGGGAGTGCAAACGGCAGAGTGTGGTTGACGTTGAGCCCTCCAAGCGCAGAGGCACCACCACCGTTATCAAAGACTTGGCAAAGACATTGGGGTTGGGAGCGGAGGACGTTGGTCAGTTGGGAGCAGCAACTTGGAGACGGGGTGGAGGAGTTGCCGTTGATATACTAAGGCAAGGTGAGAGGGTAATCAACACATTGTTACAATCGGAGGATTCTCTCAAAATATATTAATTGCCAAAATTAATTTGCTTTTTCTCTTTTTAATTTTTTTTT

mRNA sequence

ATGATCTACTATAGTGGTGAAGCTACCAAAAGTTTTACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTTGTTTGGTTCATAAAGCTAAGACGACAAGCAGCAGGGAGTGCAAACGGCAGAGTGTGGTTGACGTTGAGCCCTCCAAGCGCAGAGGCACCACCACCGTTATCAAAGACTTGGCAAAGACATTGGGGTTGGGAGCGGAGGACGTTGGTCAGTTGGGAGCAGCAACTTGGAGACGGGGTGGAGGAGTTGCCGTTGATATACTAAGGCAAGGTGAGAGGGTAATCAACACATTGTTACAATCGGAGGATTCTCTCAAAATATATTAA

Coding sequence (CDS)

ATGATCTACTATAGTGGTGAAGCTACCAAAAGTTTTACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTTGTTTGGTTCATAAAGCTAAGACGACAAGCAGCAGGGAGTGCAAACGGCAGAGTGTGGTTGACGTTGAGCCCTCCAAGCGCAGAGGCACCACCACCGTTATCAAAGACTTGGCAAAGACATTGGGGTTGGGAGCGGAGGACGTTGGTCAGTTGGGAGCAGCAACTTGGAGACGGGGTGGAGGAGTTGCCGTTGATATACTAAGGCAAGGTGAGAGGGTAATCAACACATTGTTACAATCGGAGGATTCTCTCAAAATATATTAA

Protein sequence

MIYYSGEATKSFTSTVGMKDENKGCLVHKAKTTSSRECKRQSVVDVEPSKRRGTTTVIKDLAKTLGLGAEDVGQLGAATWRRGGGVAVDILRQGERVINTLLQSEDSLKIY*
Homology
[Close]
BLAST of CsaV3_7G022410.1 vs. NCBI nr
Match: XP_031745179.1 (uncharacterized protein LOC105436122 [Cucumis sativus] >KAE8646090.1 hypothetical protein Csa_016313 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MIYYSGEATKSFTSTVGMKDENKGCLVHKAKTTSSRECKRQSVVDVEPSKRRGTTTVIKD 60
           MIYYSGEATKSFTSTVGMKDENKGCLVHKAKTTSSRECKRQSVVDVEPSKRRGTTTVIKD
Sbjct: 1   MIYYSGEATKSFTSTVGMKDENKGCLVHKAKTTSSRECKRQSVVDVEPSKRRGTTTVIKD 60

Query: 61  LAKTLGLGAEDVGQLGAATWRRGGGVAVDILRQGERVINTLLQSEDSLKIY 112
           LAKTLGLGAEDVGQLGAATWRRGGGVAVDILRQGERVINTLLQSEDSLKIY
Sbjct: 61  LAKTLGLGAEDVGQLGAATWRRGGGVAVDILRQGERVINTLLQSEDSLKIY 111

The following BLAST results are available for this feature:
BLAST of CsaV3_7G022410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031745179.11.8e-53100.00uncharacterized protein LOC105436122 [Cucumis sativus] >KAE8646090.1 hypothetica... [more]
BLAST of CsaV3_7G022410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G022410CsaV3_7G022410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G022410.1.exon5CsaV3_7G022410.1.exon5exon
CsaV3_7G022410.1.exon4CsaV3_7G022410.1.exon4exon
CsaV3_7G022410.1.exon3CsaV3_7G022410.1.exon3exon
CsaV3_7G022410.1.exon2CsaV3_7G022410.1.exon2exon
CsaV3_7G022410.1.exon1CsaV3_7G022410.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G022410.1.cds5CsaV3_7G022410.1.cds5CDS
CsaV3_7G022410.1.cds4CsaV3_7G022410.1.cds4CDS
CsaV3_7G022410.1.cds3CsaV3_7G022410.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G022410.1CsaV3_7G022410.1-proteinpolypeptide