CsaV3_7G022300.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G022300.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 11206815 .. 11208006 (+)
Sequence length168
RNA-Seq ExpressionCsaV3_7G022300.1
SyntenyCsaV3_7G022300.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCTTTGGGAATCAGAAAAGGTACATGGTCAGTTATCACATCTCATTCAATAAAGAAAGAGGCATCATGATTACTTTTGAATGCACGATGAACTTATAAATATACCTAAATTTTCCTCTTCTCAACCCATTTGCATCCATTATTCTCATGTGTCCTTGGGTTTTTCTTCTAAGTTCTATCTTTTCCTCCAGCAAACTCTCAATCATCCTTGAAGTTCCAAAACAAAAACATCCATGACCGAGCAACAATGGAACACCCTCGCCTTCACCAAAACCCTCATTCTTAATTGAAAGAAGCATTTGGCTTCATCCTCAAACTCACTACCTACAATGAAAGAAGAGAAATGGATGAAGAAGAGAAATGGATGAAGAAGACAACGGAAAGGTCGTCGGATGATAGAGAGTTGGTGCACCTCTTGCGTGCATTCGAAGAAAGGGTCTCTAACAGCAAGATATAGCTTGAGGTGACCCGGGAGAAATTAATGAGACTGACGAAGGAAAAAGAAAGAAAACGTGAGAGGAAGAAAGCGAGCAAGTTGAGACACTGTCCTCTAAACAGATGGCAATAAGGGGAGAAGACGTCTAGCATGCTGAAGCACTCAAAGCTGAGTTACAGGCGATGAGCCTTGAGGAAAGTAAACGAGCATCGCCAAAGAAGACCATAAAGAAGGATGTCATCAAGCCTATAAAGGTCAAAAGCAAGGTTGGTACTTCTAGATCTGAGGGAGGACAACCAGGCGGCGAGGGGAGCGAGGTCCCACACGAGCTAGCATCTCCAGAGAAGTAAAGGTCAAGAAGGGTTGAAAGATTTGATCGTAGGGGTAGGGTTGTGAGATATGCAACAACTAATATGCAAGATGGAAAGAATTGAATTGACAAGTAATATGTGTATAAAAGTTACATGAGTAAATCGATTACAAGAAATGAGAAGAGGTTGGCCTATCGATACTATTCTTCCAACTACTTTGTAACCCAACCTTACAACAGTAGAGACATGTCGAGGTGAACCCATAGGAACTAGTGGCTAGAATTATTAGAATCTAAATCTCAAGAAAAGAATTTATTAGTAACTTTAAGAACAAAAAAAAACAATTATAGGAATACAATCTTGAGTTTTGTAACATTTAAGAAACTAAATGGGGTCTGATTATGAAAGAAATAGTCCTTCAAAAATTCAATTCAACAAAGTGAG

mRNA sequence

ATGAGCCTTGAGGAAAGTAAACGAGCATCGCCAAAGAAGACCATAAAGAAGGATGTCATCAAGCCTATAAAGGTCAAAAGCAAGGTTGGTACTTCTAGATCTGAGGGAGGACAACCAGGCGGCGAGGGGAGCGAGGTCCCACACGAGCTAGCATCTCCAGAGAAGTAA

Coding sequence (CDS)

ATGAGCCTTGAGGAAAGTAAACGAGCATCGCCAAAGAAGACCATAAAGAAGGATGTCATCAAGCCTATAAAGGTCAAAAGCAAGGTTGGTACTTCTAGATCTGAGGGAGGACAACCAGGCGGCGAGGGGAGCGAGGTCCCACACGAGCTAGCATCTCCAGAGAAGTAA

Protein sequence

MSLEESKRASPKKTIKKDVIKPIKVKSKVGTSRSEGGQPGGEGSEVPHELASPEK*
Homology
[Close]
BLAST of CsaV3_7G022300.1 vs. NCBI nr
Match: KAE8646083.1 (hypothetical protein Csa_016534 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MSLEESKRASPKKTIKKDVIKPIKVKSKVGTSRSEGGQPGGEGSEVPHELASPEK 56
          MSLEESKRASPKKTIKKDVIKPIKVKSKVGTSRSEGGQPGGEGSEVPHELASPEK
Sbjct: 1  MSLEESKRASPKKTIKKDVIKPIKVKSKVGTSRSEGGQPGGEGSEVPHELASPEK 55

The following BLAST results are available for this feature:
BLAST of CsaV3_7G022300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646083.11.5e-19100.00hypothetical protein Csa_016534 [Cucumis sativus][more]
BLAST of CsaV3_7G022300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G022300CsaV3_7G022300gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G022300.1.exon1CsaV3_7G022300.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G022300.1.cds1CsaV3_7G022300.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G022300.1CsaV3_7G022300.1-proteinpolypeptide