CsaV3_7G018650.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G018650.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 8578119 .. 8578412 (+)
Sequence length183
RNA-Seq ExpressionCsaV3_7G018650.1
SyntenyCsaV3_7G018650.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACCCTGCACAGTCACAGTCTTGTGATCCCGTAGGATACACGTATCAGTCTAACACCCTGAGGGACGTACATTTCAGTCTAGTGTTCTGCAGAAACACATATCAGTCTAATGCTCCCGAAGGGTGCATAATAATTGGTGATCCCGTGGGACACCTACAAGGTACACATCCCAATAAAAACTAAGAATTTTCCCCTCAGTCCATTCTAAACATCTTAACAGTCATTTATAACACCATTCCATTACTTCAGTTTTCTCACTTAACATTTTAACAGTCAACTTATCTCACTTTAG

mRNA sequence

TACCCTGCACAGTCACAGTCTTGTGATCCCGTAGGATACACGTATCAGTCTAACACCCTGAGGGACGTACATTTCAGTCTAGTGTTCTGCAGAAACACATATCAGTCTAATGCTCCCGAAGGGTGCATAATAATTGGTGATCCCGTGGGACACCTACAAGGTACACATCCCAATAAAAACTAA

Coding sequence (CDS)

TACCCTGCACAGTCACAGTCTTGTGATCCCGTAGGATACACGTATCAGTCTAACACCCTGAGGGACGTACATTTCAGTCTAGTGTTCTGCAGAAACACATATCAGTCTAATGCTCCCGAAGGGTGCATAATAATTGGTGATCCCGTGGGACACCTACAAGGTACACATCCCAATAAAAACTAA

Protein sequence

YPAQSQSCDPVGYTYQSNTLRDVHFSLVFCRNTYQSNAPEGCIIIGDPVGHLQGTHPNKN*
Homology
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BLAST of CsaV3_7G018650.1 vs. NCBI nr
Match: KAE8645989.1 (hypothetical protein Csa_015494, partial [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 5.0e-29
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  YPAQSQSCDPVGYTYQSNTLRDVHFSLVFCRNTYQSNAPEGCIIIGDPVGHLQGTHPNKN 60
          YPAQSQSCDPVGYTYQSNTLRDVHFSLVFCRNTYQSNAPEGCIIIGDPVGHLQGTHPNKN
Sbjct: 1  YPAQSQSCDPVGYTYQSNTLRDVHFSLVFCRNTYQSNAPEGCIIIGDPVGHLQGTHPNKN 60

The following BLAST results are available for this feature:
BLAST of CsaV3_7G018650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645989.15.0e-29100.00hypothetical protein Csa_015494, partial [Cucumis sativus][more]
BLAST of CsaV3_7G018650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G018650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G018650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G018650CsaV3_7G018650gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G018650.1.exon1CsaV3_7G018650.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G018650.1.cds1CsaV3_7G018650.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G018650.1CsaV3_7G018650.1-proteinpolypeptide