CsaV3_7G011590.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011590.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 6429399 .. 6430059 (+)
Sequence length237
RNA-Seq ExpressionCsaV3_7G011590.1
SyntenyCsaV3_7G011590.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGGGTATGTTTTGGTGAGTATTTATGGTTTTCTTGGAATTTTTTTATAGCAATAAGCTTGTAACTTAAATTAGTTGATAACCATCATATTTAGGTGATAAATTTGAGTTGTTCGAAAGATTATATTATTGTCCAGCCAACAAGATGTGGAATTTAGGCGTCTTGAGCACATTTTGGGCGAGAATCCAAGCATTTTGAGTTAGTTTTGAGTACCTTTTGAGTTTTTGTACTAATTTTGATGAACTCATGATATTGGATGGTGGATTTTGATTTTAAGAAGTGATTAGGGTGCTGTTCATTGAAGTTGAGGTTATTTTTCCATTCGATAACTCACACCGCCGCAAGGTTATGTTTGGGAGGTTTGTTCTTCTTTCTCAAAACTCATTTCTTTTTGCAATATATAAATATATTTGTTCTCTGTTCATTTTCTCTATGCAGATGACATTAGAACGCATAGTAAAGGACTCTGTCGTTCATGCTATCAAGGTGATTTTACAAACTATCCAAACTTTGGAAAACATTCGAGAGTTTTGCTATGCTATGGATTTGATTATAGGTTAGGATTTAATTATACCAAGTATGAAATATCCCAATTGGGAGATGAACCGTATGATGTAGATGAAGAAGAATTGATTTCTAATTGTATGACTTTATAA

mRNA sequence

ATGTTGTGGGTATGTTTTGATGACATTAGAACGCATAGTAAAGGACTCTGTCGTTCATGCTATCAAGGTGATTTTACAAACTATCCAAACTTTGGAAAACATTCGAGAGTTTTGCTATGCTATGGATTTGATTATAGGTTAGGATTTAATTATACCAAGTATGAAATATCCCAATTGGGAGATGAACCGTATGATGTAGATGAAGAAGAATTGATTTCTAATTGTATGACTTTATAA

Coding sequence (CDS)

ATGTTGTGGGTATGTTTTGATGACATTAGAACGCATAGTAAAGGACTCTGTCGTTCATGCTATCAAGGTGATTTTACAAACTATCCAAACTTTGGAAAACATTCGAGAGTTTTGCTATGCTATGGATTTGATTATAGGTTAGGATTTAATTATACCAAGTATGAAATATCCCAATTGGGAGATGAACCGTATGATGTAGATGAAGAAGAATTGATTTCTAATTGTATGACTTTATAA

Protein sequence

MLWVCFDDIRTHSKGLCRSCYQGDFTNYPNFGKHSRVLLCYGFDYRLGFNYTKYEISQLGDEPYDVDEEELISNCMTL*
Homology
[Close]
BLAST of CsaV3_7G011590.1 vs. NCBI nr
Match: KGN44048.1 (hypothetical protein Csa_011886 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 4.3e-41
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MLWVCFDDIRTHSKGLCRSCYQGDFTNYPNFGKHSRVLLCYGFDYRLGFNYTKYEISQLG 60
          MLWVCFDDIRTHSKGLCRSCYQGDFTNYPNFGKHSRVLLCYGFDYRLGFNYTKYEISQLG
Sbjct: 1  MLWVCFDDIRTHSKGLCRSCYQGDFTNYPNFGKHSRVLLCYGFDYRLGFNYTKYEISQLG 60

Query: 61 DEPYDVDEEELISNCMTL 79
          DEPYDVDEEELISNCMTL
Sbjct: 61 DEPYDVDEEELISNCMTL 78

[Close]
BLAST of CsaV3_7G011590.1 vs. ExPASy TrEMBL
Match: A0A0A0K3I1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G135930 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MLWVCFDDIRTHSKGLCRSCYQGDFTNYPNFGKHSRVLLCYGFDYRLGFNYTKYEISQLG 60
          MLWVCFDDIRTHSKGLCRSCYQGDFTNYPNFGKHSRVLLCYGFDYRLGFNYTKYEISQLG
Sbjct: 1  MLWVCFDDIRTHSKGLCRSCYQGDFTNYPNFGKHSRVLLCYGFDYRLGFNYTKYEISQLG 60

Query: 61 DEPYDVDEEELISNCMTL 79
          DEPYDVDEEELISNCMTL
Sbjct: 61 DEPYDVDEEELISNCMTL 78

The following BLAST results are available for this feature:
BLAST of CsaV3_7G011590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44048.14.3e-41100.00hypothetical protein Csa_011886 [Cucumis sativus][more]
BLAST of CsaV3_7G011590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011590.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3I12.1e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G135930 PE=4 SV=1[more]
BLAST of CsaV3_7G011590.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G011590CsaV3_7G011590gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G011590.1.exon1CsaV3_7G011590.1.exon1exon
CsaV3_7G011590.1.exon2CsaV3_7G011590.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G011590.1.cds1CsaV3_7G011590.1.cds1CDS
CsaV3_7G011590.1.cds2CsaV3_7G011590.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G011590.1CsaV3_7G011590.1-proteinpolypeptide