CsaV3_7G006160.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006160.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 3741276 .. 3741435 (+)
Sequence length160
RNA-Seq ExpressionCsaV3_7G006160.1
SyntenyCsaV3_7G006160.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCCATTACATTTTATGATTGGAGAAAGGAGCCTGGTCTTGACTTCCAACTTGAAGCTGATCCATTACATTTGACTGAGGGACAGAAATTGATTGCCCTTGGCTTAGAACTTGAAACTTCATGCTTTGTAATGCTGTTTACAACATACACAACATCAA

mRNA sequence

AGATCCATTACATTTTATGATTGGAGAAAGGAGCCTGGTCTTGACTTCCAACTTGAAGCTGATCCATTACATTTGACTGAGGGACAGAAATTGATTGCCCTTGGCTTAGAACTTGAAACTTCATGCTTTGTAATGCTGTTTACAACATACACAACATCAA

Coding sequence (CDS)

AGATCCATTACATTTTATGATTGGAGAAAGGAGCCTGGTCTTGACTTCCAACTTGAAGCTGATCCATTACATTTGACTGAGGGACAGAAATTGATTGCCCTTGGCTTAGAACTTGAAACTTCATGCTTTGTAATGCTGTTTACAACATACACAACATCAA

Protein sequence

RSITFYDWRKEPGLDFQLEADPLHLTEGQKLIALGLELETSCFVMLFTTYTTSX
Homology
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BLAST of CsaV3_7G006160.1 vs. NCBI nr
Match: KAE8645792.1 (hypothetical protein Csa_017154, partial [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  RSITFYDWRKEPGLDFQLEADPLHLTEGQKLIALGLELETSCFVMLFTTYTTS 54
          RSITFYDWRKEPGLDFQLEADPLHLTEGQKLIALGLELETSCFVMLFTTYTTS
Sbjct: 1  RSITFYDWRKEPGLDFQLEADPLHLTEGQKLIALGLELETSCFVMLFTTYTTS 53

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645792.11.5e-21100.00hypothetical protein Csa_017154, partial [Cucumis sativus][more]
BLAST of CsaV3_7G006160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G006160CsaV3_7G006160gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G006160.1.exon1CsaV3_7G006160.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G006160.1.cds1CsaV3_7G006160.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G006160.1CsaV3_7G006160.1-proteinpolypeptide