CsaV3_7G004350.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G004350.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 3135020 .. 3135226 (+)
Sequence length207
RNA-Seq ExpressionCsaV3_7G004350.1
SyntenyCsaV3_7G004350.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTGAGTCCTTTCTCTTTAATTGAGAAAAGCTCTTTCACTGATGATCATTACTCGACCGGCCCAATTCTAGCTTATTCTCATACTAGGGAAAACCTCCGAGGAAAGATTAAAGAGAAAGAGAGAGAACAAAAGGAGGTAAAGCCTACAACTACTTTGCACCCTGGCTTCTTGCTAAAGTTGTGCTCAGACAACAACGGATAA

mRNA sequence

ATGAATGTGAGTCCTTTCTCTTTAATTGAGAAAAGCTCTTTCACTGATGATCATTACTCGACCGGCCCAATTCTAGCTTATTCTCATACTAGGGAAAACCTCCGAGGAAAGATTAAAGAGAAAGAGAGAGAACAAAAGGAGGTAAAGCCTACAACTACTTTGCACCCTGGCTTCTTGCTAAAGTTGTGCTCAGACAACAACGGATAA

Coding sequence (CDS)

ATGAATGTGAGTCCTTTCTCTTTAATTGAGAAAAGCTCTTTCACTGATGATCATTACTCGACCGGCCCAATTCTAGCTTATTCTCATACTAGGGAAAACCTCCGAGGAAAGATTAAAGAGAAAGAGAGAGAACAAAAGGAGGTAAAGCCTACAACTACTTTGCACCCTGGCTTCTTGCTAAAGTTGTGCTCAGACAACAACGGATAA

Protein sequence

MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLLKLCSDNNG*
Homology
[Close]
BLAST of CsaV3_7G004350.1 vs. NCBI nr
Match: KGN43606.1 (hypothetical protein Csa_020425 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 4.6e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL 60
          MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL
Sbjct: 1  MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL 60

Query: 61 KLCSDNNG 69
          KLCSDNNG
Sbjct: 61 KLCSDNNG 68

[Close]
BLAST of CsaV3_7G004350.1 vs. ExPASy TrEMBL
Match: A0A0A0K714 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047410 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL 60
          MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL
Sbjct: 1  MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL 60

Query: 61 KLCSDNNG 69
          KLCSDNNG
Sbjct: 61 KLCSDNNG 68

The following BLAST results are available for this feature:
BLAST of CsaV3_7G004350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43606.14.6e-31100.00hypothetical protein Csa_020425 [Cucumis sativus][more]
BLAST of CsaV3_7G004350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G004350.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7142.2e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047410 PE=4 SV=1[more]
BLAST of CsaV3_7G004350.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 24..44

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G004350CsaV3_7G004350gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G004350.1.exon1CsaV3_7G004350.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G004350.1.cds1CsaV3_7G004350.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G004350.1CsaV3_7G004350.1-proteinpolypeptide