CsaV3_6G052940.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G052940.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 30911668 .. 30912825 (+)
Sequence length213
RNA-Seq ExpressionCsaV3_6G052940.1
SyntenyCsaV3_6G052940.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAAGCGTGAGTGTGAGAGCTTGTTGGAGTAGGTCACGAACATGCAACCAATATCTTAAAGTTAGTTTTTATGTTAACCAACAAGTCAAGTCGATCAATTTTCTAGATTGATTACTATCGACAATTAGTAAAGTTTATATCAAATGACCAACCAACAACAACTTCGTTTGGTTTTGGTAAAACTAATCAGGTTGTGCTTGAACTCCATTTTCAAATAACTAAATATAAAAAAAAAAGTTTTAAAAAATAACAACGAGCTTGACAACTACAACAAATGGTTTTTGAAAAAAAAAAACTCGTTTATAAAACAAGGTGTAAAATACATTTAAAACTCTTTAGAAAAATTAATTTTAAGTATTTAGTGATTAGTCTCCTTAATTCGTACGAATCATTCAGATCACCCGTGTAATCATTCAGGTTGTGCGACCATCAAAAGATAATCACTATCCACTTTTGATCATCCTCAACAAACATGAAGTCACCATTTTTGGTTTCCAGCTAACAATCAACTTTAGTTTGTTATTTATTTATTTTTCAACCTTGTAGGCTAACTTCTGATCATTTTAAAAAAATATATTCAATGTTATATATCTTTACCTGAAAATTATCATATGATCATTTAACAAAGTTCAATAAAAAGTAACCTAAAAGAACTAAATTTAAAACTCAGTAAAAGAACTGAACTAAAATTAAAGTAATACACCAAAATGGTATTTTAAGGTTTGTTTTATTTTTTAAAAGAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAGTACGTTTCCTCCACTCTCTTATCTTTCTTCGTCGACATTTAATCGCGTATGAAGGAAAACGAAAGTACTTATTTCTGCGGAAACAAGGATCAATAGTTGATATTAACTGTTGCTATAACTTTGCCACTTTTGTTAGGTGTTTAGCGGTGATGTTATACGTAAGTGTTTCATGTGGAGTGAATTTTCATTACCAAACTCTGTTTTTACAGAAAAAGAAGATTGA

mRNA sequence

ATGGCTACAAGCAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAAAAAAGAAGATTGA

Coding sequence (CDS)

ATGGCTACAAGCAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAAAAAAGAAGATTGA

Protein sequence

MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQQSSSRTKKED*
Homology
[Close]
BLAST of CsaV3_6G052940.1 vs. NCBI nr
Match: KGN49524.1 (hypothetical protein Csa_002982 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60
          MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ
Sbjct: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60

Query: 61 QSSSRTKKED 71
          QSSSRTKKED
Sbjct: 61 QSSSRTKKED 70

[Close]
BLAST of CsaV3_6G052940.1 vs. ExPASy TrEMBL
Match: A0A0A0KL31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G527070 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60
          MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ
Sbjct: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60

Query: 61 QSSSRTKKED 71
          QSSSRTKKED
Sbjct: 61 QSSSRTKKED 70

The following BLAST results are available for this feature:
BLAST of CsaV3_6G052940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49524.13.2e-27100.00hypothetical protein Csa_002982 [Cucumis sativus][more]
BLAST of CsaV3_6G052940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G052940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL311.6e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G527070 PE=4 SV=1[more]
BLAST of CsaV3_6G052940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G052940CsaV3_6G052940gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G052940.1.exon1CsaV3_6G052940.1.exon1exon
CsaV3_6G052940.1.exon2CsaV3_6G052940.1.exon2exon
CsaV3_6G052940.1.exon3CsaV3_6G052940.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G052940.1.cds1CsaV3_6G052940.1.cds1CDS
CsaV3_6G052940.1.cds2CsaV3_6G052940.1.cds2CDS
CsaV3_6G052940.1.cds3CsaV3_6G052940.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G052940.1CsaV3_6G052940.1-proteinpolypeptide