CsaV3_6G048420.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G048420.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 28398146 .. 28398757 (+)
Sequence length390
RNA-Seq ExpressionCsaV3_6G048420.1
SyntenyCsaV3_6G048420.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCGACTTCCTAACCACAGCTTTCACAAATCACATAAAGGTAAGATCAATGGAATCCGAATGCCAGCAGTCTCCAATGATGGTATGATGTTGATGTTATCCAGTTTCCACTTACAAGAATAACTGCAAAAGAGAAAAGCCAAAAGACAGAACAGAAGTACAAGAAAGAGAAGCCTCAGATCATCGGATTTGACAGCAAGGCTTGAAAAGCCATTCAGTCCCGAAAGATGGTATTTTGTTAACCGATATCATCATCAGCATATTACTAAAACACTATAAATAATAATGTAGGTCTCATGGCCAGTCCCAAGAAGTAAAGGCAGCAACGCTGCTCCACAAGGCAATGGAATATGATACCAACAGCCGATGGAGGTTCCAAACAGGAGCCATCGACATCGACTCTAATTTATTTGTGACGTTAACTCCGGCAATATACGAACATAACGTGTTCGCTCCATATCTAGTAAAGGATTGGATCTATAATCCCCCGCCACATAAAAACAATCAATTACACAACTTTTACAAGAGAGAAATTAAAATGTTTGTCTCATGGCCAGTCCAAGGTGGTAATTGCAGCGACGCTGCTCCACAAGGCGACGGAATATGA

mRNA sequence

ATGGAATCCGACTTCCTAACCACAGCTTTCACAAATCACATAAAGGTAAGATCAATGGAATCCGAATGCCAGCAGTCTCCAATGATGTCCCAAGAAGTAAAGGCAGCAACGCTGCTCCACAAGGCAATGGAATATGATACCAACAGCCGATGGAGGTTCCAAACAGGAGCCATCGACATCGACTCTAATTTATTTGTGACGTTAACTCCGGCAATATACGAACATAACGTGTTCGCTCCATATCTAGTAAAGGATTGGATCTATAATCCCCCGCCACATAAAAACAATCAATTACACAACTTTTACAAGAGAGAAATTAAAATGTTTGTCTCATGGCCAGTCCAAGGTGGTAATTGCAGCGACGCTGCTCCACAAGGCGACGGAATATGA

Coding sequence (CDS)

ATGGAATCCGACTTCCTAACCACAGCTTTCACAAATCACATAAAGGTAAGATCAATGGAATCCGAATGCCAGCAGTCTCCAATGATGTCCCAAGAAGTAAAGGCAGCAACGCTGCTCCACAAGGCAATGGAATATGATACCAACAGCCGATGGAGGTTCCAAACAGGAGCCATCGACATCGACTCTAATTTATTTGTGACGTTAACTCCGGCAATATACGAACATAACGTGTTCGCTCCATATCTAGTAAAGGATTGGATCTATAATCCCCCGCCACATAAAAACAATCAATTACACAACTTTTACAAGAGAGAAATTAAAATGTTTGTCTCATGGCCAGTCCAAGGTGGTAATTGCAGCGACGCTGCTCCACAAGGCGACGGAATATGA

Protein sequence

MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDIDSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCSDAAPQGDGI*
Homology
[Close]
BLAST of CsaV3_6G048420.1 vs. NCBI nr
Match: KGN49050.1 (hypothetical protein Csa_004114 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 1.5e-70
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI 60
           MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI
Sbjct: 1   MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI 60

Query: 61  DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS 120
           DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS
Sbjct: 61  DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS 120

Query: 121 DAAPQGDGI 130
           DAAPQGDGI
Sbjct: 121 DAAPQGDGI 129

[Close]
BLAST of CsaV3_6G048420.1 vs. NCBI nr
Match: KAE8647814.1 (hypothetical protein Csa_023512, partial [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 17  RSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDIDSNLFVTLTPAIYEHN 76
           +++  +C +S   SQEVKAATLLHKAMEYDTNSRWRFQTGAI+ID+N FVTLTP IYEHN
Sbjct: 35  KTLRIKC-RSHGQSQEVKAATLLHKAMEYDTNSRWRFQTGAINIDNNFFVTLTPVIYEHN 94

Query: 77  VFAPYLVKDWIYNPPPHKNNQ 98
            FAPYLVKDWIYNPP HK N+
Sbjct: 95  AFAPYLVKDWIYNPPSHKQNK 114

[Close]
BLAST of CsaV3_6G048420.1 vs. NCBI nr
Match: KAA0042594.1 (hypothetical protein E6C27_scaffold44G00900 [Cucumis melo var. makuwa] >TYK05997.1 hypothetical protein E5676_scaffold376G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 30 SQEVKAATLLHKAMEYDTNSRWRFQTGAIDIDSNLFVTLTPA 72
          SQEVKAATLLHKAMEYDTN+R RFQ GAIDID N FVTLTP+
Sbjct: 31 SQEVKAATLLHKAMEYDTNNRRRFQKGAIDIDYNYFVTLTPS 72

[Close]
BLAST of CsaV3_6G048420.1 vs. ExPASy TrEMBL
Match: A0A0A0KH71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511650 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 7.1e-71
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI 60
           MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI
Sbjct: 1   MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI 60

Query: 61  DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS 120
           DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS
Sbjct: 61  DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS 120

Query: 121 DAAPQGDGI 130
           DAAPQGDGI
Sbjct: 121 DAAPQGDGI 129

[Close]
BLAST of CsaV3_6G048420.1 vs. ExPASy TrEMBL
Match: A0A5D3C2D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00940 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.0e-10
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 30 SQEVKAATLLHKAMEYDTNSRWRFQTGAIDIDSNLFVTLTPA 72
          SQEVKAATLLHKAMEYDTN+R RFQ GAIDID N FVTLTP+
Sbjct: 31 SQEVKAATLLHKAMEYDTNNRRRFQKGAIDIDYNYFVTLTPS 72

The following BLAST results are available for this feature:
BLAST of CsaV3_6G048420.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49050.11.5e-70100.00hypothetical protein Csa_004114 [Cucumis sativus][more]
KAE8647814.12.0e-2776.54hypothetical protein Csa_023512, partial [Cucumis sativus][more]
KAA0042594.11.5e-0985.71hypothetical protein E6C27_scaffold44G00900 [Cucumis melo var. makuwa] >TYK05997... [more]
BLAST of CsaV3_6G048420.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048420.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH717.1e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511650 PE=4 SV=1[more]
A0A5D3C2D47.0e-1085.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_6G048420.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G048420CsaV3_6G048420gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G048420.1.exon1CsaV3_6G048420.1.exon1exon
CsaV3_6G048420.1.exon2CsaV3_6G048420.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G048420.1.cds1CsaV3_6G048420.1.cds1CDS
CsaV3_6G048420.1.cds2CsaV3_6G048420.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G048420.1CsaV3_6G048420.1-proteinpolypeptide