CsaV3_6G046040.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G046040.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 27242967 .. 27243178 (+)
Sequence length212
RNA-Seq ExpressionCsaV3_6G046040.1
SyntenyCsaV3_6G046040.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTAAGTAAAAATGGTAAGGGGAAGGAGGAAATGGAGGAATTGAAGAAGGGAAAGAAGATGAGTTGGATGAGTTCGTTCGTATCTGTAAAGGGGAAAGGGATGAATTTTCAACCTCAGGACCCACAGTGGAATCCGAATTTCCAAAAGCCTCCAAACCAGTCCTACTTGGAGGCTTTGCCCATCCAAATTTCTTCTTTTGACTTCGG

mRNA sequence

ATGGGGGTAAGTAAAAATGGTAAGGGGAAGGAGGAAATGGAGGAATTGAAGAAGGGAAAGAAGATGAGTTGGATGAGTTCGTTCGTATCTGTAAAGGGGAAAGGGATGAATTTTCAACCTCAGGACCCACAGTGGAATCCGAATTTCCAAAAGCCTCCAAACCAGTCCTACTTGGAGGCTTTGCCCATCCAAATTTCTTCTTTTGACTTCGG

Coding sequence (CDS)

ATGGGGGTAAGTAAAAATGGTAAGGGGAAGGAGGAAATGGAGGAATTGAAGAAGGGAAAGAAGATGAGTTGGATGAGTTCGTTCGTATCTGTAAAGGGGAAAGGGATGAATTTTCAACCTCAGGACCCACAGTGGAATCCGAATTTCCAAAAGCCTCCAAACCAGTCCTACTTGGAGGCTTTGCCCATCCAAATTTCTTCTTTTGACTTCGG

Protein sequence

MGVSKNGKGKEEMEELKKGKKMSWMSSFVSVKGKGMNFQPQDPQWNPNFQKPPNQSYLEALPIQISSFDFX
Homology
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BLAST of CsaV3_6G046040.1 vs. NCBI nr
Match: KAE8647585.1 (hypothetical protein Csa_002713, partial [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MGVSKNGKGKEEMEELKKGKKMSWMSSFVSVKGKGMNFQPQDPQWNPNFQKPPNQSYLEA 60
          MGVSKNGKGKEEMEELKKGKKMSWMSSFVSVKGKGMNFQPQDPQWNPNFQKPPNQSYLEA
Sbjct: 1  MGVSKNGKGKEEMEELKKGKKMSWMSSFVSVKGKGMNFQPQDPQWNPNFQKPPNQSYLEA 60

Query: 61 LPIQISSFDF 71
          LPIQISSFDF
Sbjct: 61 LPIQISSFDF 70

The following BLAST results are available for this feature:
BLAST of CsaV3_6G046040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647585.11.6e-31100.00hypothetical protein Csa_002713, partial [Cucumis sativus][more]
BLAST of CsaV3_6G046040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G046040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G046040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G046040CsaV3_6G046040gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G046040.1.exon1CsaV3_6G046040.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G046040.1.cds1CsaV3_6G046040.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G046040.1CsaV3_6G046040.1-proteinpolypeptide