CsaV3_6G041480.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G041480.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 24140482 .. 24140722 (-)
Sequence length239
RNA-Seq ExpressionCsaV3_6G041480.1
SyntenyCsaV3_6G041480.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGTTAGGAACCGATCAAGAACGTCCTCAACCTGTACATGCAAGAGATGGGAAGGTTTGCAGTGACGGAGCACACACAGAAGCTAGTATAGTAGTATCAATGAAGTTCTTTTTTGTGGTGAGTGGTGAGAGTGGGTCAGTGAGAAAAGCCAAAGAATACAGGCTTGTTGTTGAAGGCGGCAGAACAGATGATAACTTGTTTGGCCTCCAATGGTCTCAGCTGCTATCAAGTCTTACTTAG

mRNA sequence

CTGTTAGGAACCGATCAAGAACGTCCTCAACCTGTACATGCAAGAGATGGGAAGGTTTGCAGTGACGGAGCACACACAGAAGCTAGTATAGTAGTATCAATGAAGTTCTTTTTTGTGGTGAGTGGTGAGAGTGGGTCAGTGAGAAAAGCCAAAGAATACAGGCTTGTTGTTGAAGGCGGCAGAACAGATGATAACTTGTTTGGCCTCCAATGGTCTCAGCTGCTATCAAGTCTTACTTA

Coding sequence (CDS)

CTGTTAGGAACCGATCAAGAACGTCCTCAACCTGTACATGCAAGAGATGGGAAGGTTTGCAGTGACGGAGCACACACAGAAGCTAGTATAGTAGTATCAATGAAGTTCTTTTTTGTGGTGAGTGGTGAGAGTGGGTCAGTGAGAAAAGCCAAAGAATACAGGCTTGTTGTTGAAGGCGGCAGAACAGATGATAACTTGTTTGGCCTCCAATGGTCTCAGCTGCTATCAAGTCTTACTTA

Protein sequence

LLGTDQERPQPVHARDGKVCSDGAHTEASIVVSMKFFFVVSGESGSVRKAKEYRLVVEGGRTDDNLFGLQWSQLLSSLTX
Homology
[Close]
BLAST of CsaV3_6G041480.1 vs. NCBI nr
Match: KAE8647453.1 (hypothetical protein Csa_023536, partial [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 7.3e-36
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  LLGTDQERPQPVHARDGKVCSDGAHTEASIVVSMKFFFVVSGESGSVRKAKEYRLVVEGG 60
          +LGTDQERPQPVHARDGKVCSDGAHTEASIVVSMKFFFVVSGESGSVRKAKEYRLVVEGG
Sbjct: 1  MLGTDQERPQPVHARDGKVCSDGAHTEASIVVSMKFFFVVSGESGSVRKAKEYRLVVEGG 60

Query: 61 RTDDNLFGLQWSQLLSSLT 80
          RTDDNLFGLQWSQLLSSLT
Sbjct: 61 RTDDNLFGLQWSQLLSSLT 79

The following BLAST results are available for this feature:
BLAST of CsaV3_6G041480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647453.17.3e-3698.73hypothetical protein Csa_023536, partial [Cucumis sativus][more]
BLAST of CsaV3_6G041480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G041480CsaV3_6G041480gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G041480.1.exon1CsaV3_6G041480.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G041480.1.cds1CsaV3_6G041480.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G041480.1CsaV3_6G041480.1-proteinpolypeptide