CsaV3_6G012560.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G012560.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 8645415 .. 8645617 (+)
Sequence length126
RNA-Seq ExpressionCsaV3_6G012560.1
SyntenyCsaV3_6G012560.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATGAGCACACTGACCCTATCATATCCAATCAGCCATTGAGGCTGTTTCTTATCATCGTCGCTGCTCAACCTTTCAGGAAATCACGTGCTGCAGAGCGCAACTGCTTCACCAGTCATTGCGAGGATAACAAGGAAGATAGGGAGCATAGAAGGTATGATTCTGTGAGCCATTTATCTGATATTGTGAGTAATGCAAGAGGAG

mRNA sequence

GGCTGTTTCTTATCATCGTCGCTGCTCAACCTTTCAGGAAATCACGTGCTGCAGAGCGCAACTGCTTCACCAGTCATTGCGAGGATAACAAGGAAGATAGGGAGCATAGAAGGTATGATTCTGTGA

Coding sequence (CDS)

GGCTGTTTCTTATCATCGTCGCTGCTCAACCTTTCAGGAAATCACGTGCTGCAGAGCGCAACTGCTTCACCAGTCATTGCGAGGATAACAAGGAAGATAGGGAGCATAGAAGGTATGATTCTGTGA

Protein sequence

GCFLSSSLLNLSGNHVLQSATASPVIARITRKIGSIEGMIL*
Homology
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BLAST of CsaV3_6G012560.1 vs. NCBI nr
Match: KAE8646843.1 (hypothetical protein Csa_023946, partial [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 3.8e-12
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  GCFLSSSLLNLSGNHVLQSATASPVIARITRKIGSIEGMIL 42
          GCFLSSSLLNLSGNHVLQSATASPVIARITRKIGSIEGMIL
Sbjct: 1  GCFLSSSLLNLSGNHVLQSATASPVIARITRKIGSIEGMIL 41

The following BLAST results are available for this feature:
BLAST of CsaV3_6G012560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646843.13.8e-12100.00hypothetical protein Csa_023946, partial [Cucumis sativus][more]
BLAST of CsaV3_6G012560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G012560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G012560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G012560CsaV3_6G012560gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G012560.1.exon1CsaV3_6G012560.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G012560.1.cds1CsaV3_6G012560.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G012560.1CsaV3_6G012560.1-proteinpolypeptide