CsaV3_4G034960.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G034960.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 24685842 .. 24686238 (-)
Sequence length327
RNA-Seq ExpressionCsaV3_4G034960.1
SyntenyCsaV3_4G034960.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAATTTTTAGGAGTAGTCATTCTTCCACCTGCAATTCCATTGGGGTTGGCAAAGTATGATTTTGCCACGTACCCAAGTAAAGGAAAACCAAAAAGGATGGAACTTTAAAATCCTAATCTGGGATTTATTTATTTTTTATTTTTTAGAAAAGAAAAGAAAAAAAGATACGACTTTTGTGTGGACTCTTTCCGCAAGTAAGGAACGATCTGGATTTGGTGCAAAGCAATTAGAGGCAAAGCCACCGCGTCCGGAATATTCTCAAAAGAGGAATAAACTTCCCATGAGTTGCGCCATAAAGCAAGAGGAAAAGGAGAACAGCAAGATCAATTGTGGTGTACGCGTAAAATTAAAAAGAAAAAAGGCAGGTAATGGAAAGGAAGCTACATCATAA

mRNA sequence

ATGGGAAAATTTTTAGGAGTAGTCATTCTTCCACCTGCAATTCCATTGGGGTTGGCAAAGTATGATTTTGCCACGTACCCAAAAAAGAAAAGAAAAAAAGATACGACTTTTGTGTGGACTCTTTCCGCAAGTAAGGAACGATCTGGATTTGGTGCAAAGCAATTAGAGGCAAAGCCACCGCGTCCGGAATATTCTCAAAAGAGGAATAAACTTCCCATGAGTTGCGCCATAAAGCAAGAGGAAAAGGAGAACAGCAAGATCAATTGTGGTGTACGCGTAAAATTAAAAAGAAAAAAGGCAGGTAATGGAAAGGAAGCTACATCATAA

Coding sequence (CDS)

ATGGGAAAATTTTTAGGAGTAGTCATTCTTCCACCTGCAATTCCATTGGGGTTGGCAAAGTATGATTTTGCCACGTACCCAAAAAAGAAAAGAAAAAAAGATACGACTTTTGTGTGGACTCTTTCCGCAAGTAAGGAACGATCTGGATTTGGTGCAAAGCAATTAGAGGCAAAGCCACCGCGTCCGGAATATTCTCAAAAGAGGAATAAACTTCCCATGAGTTGCGCCATAAAGCAAGAGGAAAAGGAGAACAGCAAGATCAATTGTGGTGTACGCGTAAAATTAAAAAGAAAAAAGGCAGGTAATGGAAAGGAAGCTACATCATAA

Protein sequence

MGKFLGVVILPPAIPLGLAKYDFATYPKKKRKKDTTFVWTLSASKERSGFGAKQLEAKPPRPEYSQKRNKLPMSCAIKQEEKENSKINCGVRVKLKRKKAGNGKEATS*
Homology
[Close]
BLAST of CsaV3_4G034960.1 vs. NCBI nr
Match: KGN55264.1 (hypothetical protein Csa_012156 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 7.5e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MGKFLGVVILPPAIPLGLAKYDFATYPKKKRKKDTTFVWTLSASKERSGFGAKQLEAKPP 60
           MGKFLGVVILPPAIPLGLAKYDFATYPKKKRKKDTTFVWTLSASKERSGFGAKQLEAKPP
Sbjct: 1   MGKFLGVVILPPAIPLGLAKYDFATYPKKKRKKDTTFVWTLSASKERSGFGAKQLEAKPP 60

Query: 61  RPEYSQKRNKLPMSCAIKQEEKENSKINCGVRVKLKRKKAGNGKEATS 109
           RPEYSQKRNKLPMSCAIKQEEKENSKINCGVRVKLKRKKAGNGKEATS
Sbjct: 61  RPEYSQKRNKLPMSCAIKQEEKENSKINCGVRVKLKRKKAGNGKEATS 108

[Close]
BLAST of CsaV3_4G034960.1 vs. ExPASy TrEMBL
Match: A0A0A0L2J9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642450 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.7e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MGKFLGVVILPPAIPLGLAKYDFATYPKKKRKKDTTFVWTLSASKERSGFGAKQLEAKPP 60
           MGKFLGVVILPPAIPLGLAKYDFATYPKKKRKKDTTFVWTLSASKERSGFGAKQLEAKPP
Sbjct: 1   MGKFLGVVILPPAIPLGLAKYDFATYPKKKRKKDTTFVWTLSASKERSGFGAKQLEAKPP 60

Query: 61  RPEYSQKRNKLPMSCAIKQEEKENSKINCGVRVKLKRKKAGNGKEATS 109
           RPEYSQKRNKLPMSCAIKQEEKENSKINCGVRVKLKRKKAGNGKEATS
Sbjct: 61  RPEYSQKRNKLPMSCAIKQEEKENSKINCGVRVKLKRKKAGNGKEATS 108

The following BLAST results are available for this feature:
BLAST of CsaV3_4G034960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55264.17.5e-52100.00hypothetical protein Csa_012156 [Cucumis sativus][more]
BLAST of CsaV3_4G034960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G034960.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2J93.7e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642450 PE=4 SV=1[more]
BLAST of CsaV3_4G034960.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..71

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G034960CsaV3_4G034960gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G034960.1.exon2CsaV3_4G034960.1.exon2exon
CsaV3_4G034960.1.exon1CsaV3_4G034960.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G034960.1.cds2CsaV3_4G034960.1.cds2CDS
CsaV3_4G034960.1.cds1CsaV3_4G034960.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G034960.1CsaV3_4G034960.1-proteinpolypeptide