CsaV3_4G029050.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029050.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionF-box protein SKIP24 isoform X2
Locationchr4: 18577342 .. 18582072 (-)
Sequence length531
RNA-Seq ExpressionCsaV3_4G029050.1
SyntenyCsaV3_4G029050.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTGAAGGAATATGGAAGTATAGAAGTATTTTGGGAATTTTTAATTATTTAGTGGAATATAAAGATGTAAATAAATGAGAAGAAAAGAAAAAAGGAGGATAGTTATAGTATTGTGTTGGATGATGTTTGGAATTGGATTCTAATGTGTAGGGCTCTTTCACATTCTTCATTTCCAACTTTGCAAACCCCAAAATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTACAAGAAAGGATTCATGAACCTGAACCATATCTCTTAATTTCTCTCTTCCAATCTCTCTCAATTCATTATTCTTTTCTTTTGTTCATCTTCTGTTTCGGTTAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGTAGGGTTCGGCAATTGATTCAAAATCCTTCAGTAATATTTTCTGTTTCTTTTCTCGCTTGGTGTTTTAGTGATATGTCATGTGTGCTTGTGCAACTTGGTTGCTTGCAATCTGTAAAGTTTTTTTATTGGAATTGTGTTTTCGTTGAGTTTTTAAAAGGGGGAGACTACAATAGCTGATTATTGTCATTGTATGTAAATTCAATAGAATCCTCTTACTTAAATCTTGAGTTCAACAACATCTGGGGTCGAGGCGCATGAATCTCTAACCTTTTGGATCGAGGGATATGCCTAAGCCAGTTTGAACTATGCTTAGGTTGGCAAGATCATTTTACTAGGTCGAGTGGTACTTCAGTTATTTGTTGATAACAAAGCCCAATGGATTCATTTGGAACCTTTTTACCTCTTCACGTGAATGCTAATATGTTGATTTCGGTTTGAAGTCAGAATTTTTAGATATGATAATTGTGTTTTATCGTTTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTGTAAGTTTTGAATGTGGAAACATTATTTTTCTATCTGTTAAGAACTATAATTTTAATTTCTTATACTGCTTGCCACAGAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATATATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATGTAAGGTTCTTGCTTGTTGATTATGCTTCAATTTTTTTTTTTATTGTGAATTTTGATAATTTCTTCGTGTTGCTGATGGTTTGGTTGCTATGAAATCTAACTTTCCCGTGAATTAATGAATTCTAATGTGTGCATGTGCACTGTGCTCTATTAGCATTTTTCTTCTTCAAACCATCATTATTGTTTTCTCATGATGTTACCGCTTCTCCCAGTTTTACTAAATAAACTCATTAGGATACTACATATTTCTTATGAAGGTATTTTCCTAGTCTGGCCATGGATTGATGCTCGCGTTCGTTGGTAGATTATCTGATGTCTTGAACTTAATGTCTTTTTTTAACTTTGACCTCCATAAATAACATTCACATAGAGGGTGGGGGTGGGTTGAAGGGAGGGGAGGTTTTCTTATTGTGAATGATTTGTAATTAGGTTGGAATCTTGGATTGATCTATATTTTATATTATATACTTGATTGATTAAGTTGTAGACACGTATATACTTTACCTTTTTTTCCCACAAATAAATTGGAAGAGAAAATTAGCTTACTTTTTTATTACTTCACTGTGGAAATTGTGGCTTACCTCTTTTTTCATTAGATACATAATGATAACCAAATGTTGGCACATCAACTGGCTTGTTTTCCTGTGGTTATTTTATTTTCTGGTTAAAATTTCTTCAACCTTCATGACCACAGTATTGTTTATTCCTCAACTTTCACCAGCCCTACTTAGATAATATATTCTCCTTTCTTGCCTATATTGGTACAAATGGTACTCACCCCTTATATGTACTGAATATGTTGCATGTTTGCTTAAAATCCAAGTGAGAACTCAAACTGATATGATAAATATACTTGATTACCAAATTTTCTAGAGCAAGGTAAAACAGCTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTAATAAAAACAGTTATGAATTCCGGTTGAGATGAACGTAACCACCAAAGTGTTCTGCACTAGGTGCAAAGTAATGATAAGATCGAACTGTTATATCAAACATCATATGGAGTTTTACATTTTATTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCATCAATAAGCGCTTCTTTGACCCAAGAAAATATATGTCAACTCCCAATTTGGCCTACAGATAAAGAAACTCATGGCAAATTAAATCCAAGTCAGGACAACAACACTAATTAACTGTTGCAGTTCCCACGTTCATCCAGGTACTCCCCTTCACTCTTCATTTCTCTCCTTTCCCTCTCTTTGGCAGATTATCTCGTCTATTGTGTTCAAATTGGTCATTTTTTCTTCACCATTGCAAGTTTTTTCCTTCCAGATCTGTTTGTATGTGTGTGTTTTCCAGATTCATAGCTCTAAATGCTCTACACTTTTTAGATCCGAGACCCTAACCTCCTCAGCTGCCTCAAGGAAAACTAAAAAAAAATCACTCTTCTCGCAAGAAAGAGCTTAGTTATGTCTAATGATCAAATGATCAAGAGGTTCGTGGTTCATATCTCCCACCCACACTTGTACTCAAATCAGCCTCTTGGTGCTATCTTTCTTATTCCCTCATCTACTGTAGCTTCCTTGCCGTTGGTTCTTGTGTTTTTTGTATTTGAGTTAAAATAACAAAGGAATAGCTTGGTAGGGGACAGCTAGTGCTTGAATCTTGGTGGGCGGGAGGCAACTGCTTAAGCTTTGTTCTATCCTTTCAATATTAGTCGATGATAGGACATACATGTTCAATCTGTATTTTTGCTGCATGAATTTCTTCATTCCTTCCTTGAGAAAATTTTCTCTGATATGTTTCTGTCTTTGTTTTCACTCCTTTTTTATTCTATTTTTGTCTTCGTTTGTTTGATTGGATCTGTTTTTTTCCCGATTTAGTTTCATAAGTTTCATTTGTATGAAAGAAAATCAGTTATGGGTTGCATGAATGTTTCATGTTGGAATATCATTATGAACTGAGGATGTATTTGGTGCATGTGCGAGAGTAGGCCAAGATTACAAATTCATATAAAATTATATTAAACTATAATTGATACTAGTATATCTGTTTGAACATGTGTGATCGCAAATAGACTAGGAAAGAATTCCTTCCTTCATTAGGATGAGTTGTCATTCGTGTTTGGAAAGAGGATTGGTCTAGAGACTCCACGGGATATAGCATCGAATGACAATGAGCACTTGAGGCAGATGCGCATGTGGAAGGATCTCAAGAACATTATATTTCAGTTCCCTCTGATGTTTGGCACAACAGCCACTGTATACAAAGACTGTTGTAGGTCTGACTCCAATAGGGACTAAAATTGGTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAAGATATGTTAAACGTGGTATGGATGATTACAATAAACATGCAAACAAGGCAACAGCTTGAGAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGGCAACGAAAGGAAGTGGTGGAGAGAGATTCCCTCAATTGTTAGAGTTGTTCCAACGGGTTAAGGTCAAACTAATGGATATCATATTCACGAATGTAGATGGAGCAAAAAAATTCCTTGCCTATTCCAATCAAGCTGAAAAGTACTTGTTGAATGCACTCTTGGGTAAAGGTGAATAAATAGCCTGTCTTGCAACAAAATCAATTTGCTTGGTTTGGAAAAGAACAAATTTTTTAAATCAACTCAATTTGATCCTTTTTTTTTTTCATATTAAAACTGTGTTTACTTGTTTTTTTTCTTTTAAGTTTGAACCACAGACTTGTTGATTCTTAGCGTACACTAGTGTCAGTATTATTATTGCACGTTCTTTTATCTATATTTTCTTACCGGTTAACATAGATGTGAAGTTATTGTGTTGTGTATTTACTGCGAATTCTATGTACTACGCCTATTTCCTTGTAAATTTTTCTTAACCAATTTTATTCTTTAAATATTAGGTCAAAATCACCTTTTTGTTTGTATTATACTTCAGTTCCTATTCAAATTGGATTCTGTATACTTTTTGGTGGTCTTAAATCAAGTCGAATCGAACTGATTACAGCTTACTTTTTAATTGTCTAATTTTAGACTACAAATAAGAGAAAAGATGTCACATATTTCCATCTAAAATTTAGTGAAAT

mRNA sequence

ATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTAA

Coding sequence (CDS)

ATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTAA

Protein sequence

MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL*
Homology
[Close]
BLAST of CsaV3_4G029050.1 vs. NCBI nr
Match: XP_031740308.1 (F-box protein SKIP24 isoform X2 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 4.3e-89
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]
BLAST of CsaV3_4G029050.1 vs. NCBI nr
Match: XP_004144305.1 (F-box protein SKIP24 isoform X1 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 4.3e-89
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]
BLAST of CsaV3_4G029050.1 vs. NCBI nr
Match: KAE8649654.1 (hypothetical protein Csa_012157 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 4.3e-89
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]
BLAST of CsaV3_4G029050.1 vs. NCBI nr
Match: XP_016901824.1 (PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo])

HSP 1 Score: 315.1 bits (806), Expect = 3.9e-82
Identity = 167/176 (94.89%), Postives = 169/176 (96.02%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TT+ TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]
BLAST of CsaV3_4G029050.1 vs. NCBI nr
Match: TYK09707.1 (F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 3.9e-82
Identity = 167/176 (94.89%), Postives = 169/176 (96.02%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TT+ TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]
BLAST of CsaV3_4G029050.1 vs. ExPASy Swiss-Prot
Match: Q9CAZ0 (F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 6.8e-45
Identity = 100/176 (56.82%), Postives = 132/176 (75.00%), Query Frame = 0 

Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSS-SS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
           +  SS S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KL
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKL 179

[Close]
BLAST of CsaV3_4G029050.1 vs. ExPASy TrEMBL
Match: A0A0A0L0S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416990 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]
BLAST of CsaV3_4G029050.1 vs. ExPASy TrEMBL
Match: A0A5D3CCI3 (F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001230 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.9e-82
Identity = 167/176 (94.89%), Postives = 169/176 (96.02%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TT+ TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]
BLAST of CsaV3_4G029050.1 vs. ExPASy TrEMBL
Match: A0A1S4E0S8 (F-box protein SKIP24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.9e-82
Identity = 167/176 (94.89%), Postives = 169/176 (96.02%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TT+ TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]
BLAST of CsaV3_4G029050.1 vs. ExPASy TrEMBL
Match: A0A1S4E0Q4 (F-box protein SKIP24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.4e-80
Identity = 167/181 (92.27%), Postives = 169/181 (93.37%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 177
           TT+ TE SNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

[Close]
BLAST of CsaV3_4G029050.1 vs. ExPASy TrEMBL
Match: A0A5A7TK06 (F-box protein SKIP24 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001020 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.4e-80
Identity = 167/181 (92.27%), Postives = 169/181 (93.37%), Query Frame = 0 

Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 177
           TT+ TE SNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

[Close]
BLAST of CsaV3_4G029050.1 vs. TAIR 10
Match: AT1G08710.1 (F-box family protein )

HSP 1 Score: 181.8 bits (460), Expect = 4.8e-46
Identity = 100/176 (56.82%), Postives = 132/176 (75.00%), Query Frame = 0 

Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSS-SS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
           +  SS S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KL
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKL 179

[Close]
BLAST of CsaV3_4G029050.1 vs. TAIR 10
Match: AT1G08710.2 (F-box family protein )

HSP 1 Score: 181.8 bits (460), Expect = 4.8e-46
Identity = 100/176 (56.82%), Postives = 132/176 (75.00%), Query Frame = 0 

Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSS-SS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
           +  SS S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KL
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKL 179

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031740308.14.3e-89100.00F-box protein SKIP24 isoform X2 [Cucumis sativus][more]
XP_004144305.14.3e-89100.00F-box protein SKIP24 isoform X1 [Cucumis sativus][more]
KAE8649654.14.3e-89100.00hypothetical protein Csa_012157 [Cucumis sativus][more]
XP_016901824.13.9e-8294.89PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo][more]
TYK09707.13.9e-8294.89F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_4G029050.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CAZ06.8e-4556.82F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2[more]
BLAST of CsaV3_4G029050.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0S22.1e-89100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416990 PE=4 SV=1[more]
A0A5D3CCI31.9e-8294.89F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S4E0S81.9e-8294.89F-box protein SKIP24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=... [more]
A0A1S4E0Q41.4e-8092.27F-box protein SKIP24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=... [more]
A0A5A7TK061.4e-8092.27F-box protein SKIP24 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of CsaV3_4G029050.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08710.14.8e-4656.82F-box family protein [more]
AT1G08710.24.8e-4656.82F-box family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..112
NoneNo IPR availableGENE3D1.20.1280.50coord: 1..154
e-value: 1.9E-5
score: 26.5
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 1..76

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G029050CsaV3_4G029050gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G029050.1.exon6CsaV3_4G029050.1.exon6exon
CsaV3_4G029050.1.exon5CsaV3_4G029050.1.exon5exon
CsaV3_4G029050.1.exon4CsaV3_4G029050.1.exon4exon
CsaV3_4G029050.1.exon3CsaV3_4G029050.1.exon3exon
CsaV3_4G029050.1.exon2CsaV3_4G029050.1.exon2exon
CsaV3_4G029050.1.exon1CsaV3_4G029050.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G029050.1.cds4CsaV3_4G029050.1.cds4CDS
CsaV3_4G029050.1.cds3CsaV3_4G029050.1.cds3CDS
CsaV3_4G029050.1.cds2CsaV3_4G029050.1.cds2CDS
CsaV3_4G029050.1.cds1CsaV3_4G029050.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G029050.1CsaV3_4G029050.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding