CsaV3_4G022040.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G022040.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 13129774 .. 13130007 (-)
Sequence length234
RNA-Seq ExpressionCsaV3_4G022040.1
SyntenyCsaV3_4G022040.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCCGGCGCGGCACTGCAGACAACAGAGGAGAAGGGATCGGTGGACGGCGGTTGTGAGCGGCGGACGTGGCGGTTACTGCTTCACACGGTGGCTCGGCTTCGACGGAGACAGAACAAGACGCGAAAACGGTGCAGATCTGGACCGGGCAGCGGCGGAAGGGCAACGGGCGGTCTTGCGGTGCAGATCTGGACGGCGGCAGATCTGGACGTGTACGGCTGCTTTGCGAACTGA

mRNA sequence

GCTTCCGGCGCGGCACTGCAGACAACAGAGGAGAAGGGATCGGTGGACGGCGGTTGTGAGCGGCGGACGTGGCGGTTACTGCTTCACACGGTGGCTCGGCTTCGACGGAGACAGAACAAGACGCGAAAACGGTGCAGATCTGGACCGGGCAGCGGCGGAAGGGCAACGGGCGGTCTTGCGGTGCAGATCTGGACGGCGGCAGATCTGGACGTGTACGGCTGCTTTGCGAACTGA

Coding sequence (CDS)

GCTTCCGGCGCGGCACTGCAGACAACAGAGGAGAAGGGATCGGTGGACGGCGGTTGTGAGCGGCGGACGTGGCGGTTACTGCTTCACACGGTGGCTCGGCTTCGACGGAGACAGAACAAGACGCGAAAACGGTGCAGATCTGGACCGGGCAGCGGCGGAAGGGCAACGGGCGGTCTTGCGGTGCAGATCTGGACGGCGGCAGATCTGGACGTGTACGGCTGCTTTGCGAACTGA

Protein sequence

ASGAALQTTEEKGSVDGGCERRTWRLLLHTVARLRRRQNKTRKRCRSGPGSGGRATGGLAVQIWTAADLDVYGCFAN*
Homology
[Close]
BLAST of CsaV3_4G022040.1 vs. NCBI nr
Match: KAE8649463.1 (hypothetical protein Csa_018891, partial [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  ASGAALQTTEEKGSVDGGCERRTWRLLLHTVARLRRRQNKTRKRCRSGPGSGGRATGGLA 60
          ASGAALQTTEEKGSVDGGCERRTWRLLLHTVARLRRRQNKTRKRCRSGPGSGGRATGGLA
Sbjct: 1  ASGAALQTTEEKGSVDGGCERRTWRLLLHTVARLRRRQNKTRKRCRSGPGSGGRATGGLA 60

Query: 61 VQIWTAADLDVYGCFAN 78
          VQIWTAADLDVYGCFAN
Sbjct: 61 VQIWTAADLDVYGCFAN 77

[Close]
BLAST of CsaV3_4G022040.1 vs. NCBI nr
Match: KAE8637257.1 (hypothetical protein CSA_004647, partial [Cucumis sativus] >KAE8649441.1 hypothetical protein Csa_018905, partial [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 49/78 (62.82%), Postives = 52/78 (66.67%), Query Frame = 0 

Query: 10 EEKGSVDGGCERRTWRLLLHTVARLRRRQNKTRKRCRSGPGSGGRAT----------GGL 69
          +    +DGGCERRTWRLLLHTVARLRRRQNKTRKR +      G A            GL
Sbjct: 15 DRAAGLDGGCERRTWRLLLHTVARLRRRQNKTRKRLQRREAVHGDANLDRAAAEGQRRGL 74

Query: 70 AVQIWTAADLDVYGCFAN 78
          AVQIW AADLD YGCFAN
Sbjct: 75 AVQIWKAADLDAYGCFAN 92

The following BLAST results are available for this feature:
BLAST of CsaV3_4G022040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649463.11.2e-35100.00hypothetical protein Csa_018891, partial [Cucumis sativus][more]
KAE8637257.11.4e-1562.82hypothetical protein CSA_004647, partial [Cucumis sativus] >KAE8649441.1 hypothe... [more]
BLAST of CsaV3_4G022040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G022040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G022040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G022040CsaV3_4G022040gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G022040.1.exon1CsaV3_4G022040.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G022040.1.cds1CsaV3_4G022040.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G022040.1CsaV3_4G022040.1-proteinpolypeptide