CsaV3_4G020810.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G020810.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 12698757 .. 12698929 (+)
Sequence length	173
RNA-Seq Expression	CsaV3_4G020810.1
Synteny	CsaV3_4G020810.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCACGGCGACGCAGATCTGGACGACAGCTGCAAGGCGACGCTTACAACTTGCTTCGCGAACAGAGATGGCGGCCGACGGTTGCAGCGGCGGCTGGGTATGGTAGAAAAGAAAGAGAAATGGAAGAAGAATAGGGTCGGCGGCCGTGGATCAGAGAAGAAAAGAAGGAG

mRNA sequence

ATGGGGCACGGCGACGCAGATCTGGACGACAGCTGCAAGGCGACGCTTACAACTTGCTTCGCGAACAGAGATGGCGGCCGACGGTTGCAGCGGCGGCTGGGTATGGTAGAAAAGAAAGAGAAATGGAAGAAGAATAGGGTCGGCGGCCGTGGATCAGAGAAGAAAAGAAGGAG

Coding sequence (CDS)

ATGGGGCACGGCGACGCAGATCTGGACGACAGCTGCAAGGCGACGCTTACAACTTGCTTCGCGAACAGAGATGGCGGCCGACGGTTGCAGCGGCGGCTGGGTATGGTAGAAAAGAAAGAGAAATGGAAGAAGAATAGGGTCGGCGGCCGTGGATCAGAGAAGAAAAGAAGGAG

Protein sequence

MGHGDADLDDSCKATLTTCFANRDGGRRLQRRLGMVEKKEKWKKNRVGGRGSEKKRRX

Homology

[Close]

BLAST of CsaV3_4G020810.1 vs. NCBI nr
Match: KAE8649442.1 (hypothetical protein Csa_018906, partial [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 8.7e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGHGDADLDDSCKATLTTCFANRDGGRRLQRRLGMVEKKEKWKKNRVGGRGSEKKRR 58
          MGHGDADLDDSCKATLTTCFANRDGGRRLQRRLGMVEKKEKWKKNRVGGRGSEKKRR
Sbjct: 1  MGHGDADLDDSCKATLTTCFANRDGGRRLQRRLGMVEKKEKWKKNRVGGRGSEKKRR 57

[Close]

BLAST of CsaV3_4G020810.1 vs. NCBI nr
Match: KAE8648453.1 (hypothetical protein Csa_009067 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 2  GHGDADLDDSCKATLTTCFANRDGGRRLQRRLGMVEKKEKWKKNRVGGRGSEKK 56
          GHGDADLDDSCK T TTCFANRDGGRRLQRRL  VE+K K ++      G E++
Sbjct: 30 GHGDADLDDSCKVTCTTCFANRDGGRRLQRRLVDVERKRKKREEGAAANGREER 83

The following BLAST results are available for this feature:

BLAST of CsaV3_4G020810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649442.1	8.7e-23	100.00	hypothetical protein Csa_018906, partial [Cucumis sativus]	[more]
KAE8648453.1	1.1e-09	66.67	hypothetical protein Csa_009067 [Cucumis sativus]	[more]

BLAST of CsaV3_4G020810.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G020810.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G020810.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..57

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G020810	CsaV3_4G020810	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G020810.1.exon1	CsaV3_4G020810.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G020810.1.cds1	CsaV3_4G020810.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G020810.1	CsaV3_4G020810.1-protein	polypeptide