CsaV3_4G005310.1 (mRNA) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GGAAAATAAGAAAAAAAAAAGTTTATTATTTTTTGTGTATTTGGAAATTAATCAATAATTCCAAAACAAAGAATAAAAATGAAATTTAAATTGTGAAAGAAAGGTAAGAAGAAGGTTTGTGTGTTTGAACCGTCCGTTTTTTAGTTGTTCGTATCATCGTCGGAGGAAAAGCTCAAGAATTTGAGGCGTCTTCTTCCCTTCCATTTCTTCCCAATTTCTTTGTTTCATCGCGAAGCAACCGCGAAATTTCCACGCCGTTCCTCCTTTTTCACTATTGGTGGCTGGGATCATCTTCATCGCTGTTCTTCCCTACAAAAAGGCTTTTTTTCCTCCATATTTTTTCCTCAATCCATTCTGAAATTCCAACACCTTAGTTCCTCAATCGATTTTCGATCCATTTTCACCCGAGATTTCTCCGTATACAGGTCAGTTTGTTGGCTATCTTCCTCCCTCTACAATTTTCTTACTTTTCGTTCTGTTCTTTGTGGAGAATGGTACAAAATGGTAGAATGAAATGGGGGTTATCTAATTTCTTTTTCTTGGGGGGTTGGTTTTGGAGTCAAATGGATGAAGCCCAGAACGGGTTGATGATTCGGGGATTGTTTTTATTAGGTCTTCTGAATTTTATTGGTTTATTGCATTTTTCTTTGTTTTTTCAACCAAAATTTCTGAAGTAAGATGGAATTGTTAGGGTTTCGTGAATCGAGTTTCGTTAAAAAAATGTTCGGAATGTTGCCGCAGAGTCGAATGGCCGCTGGTGCGGCTTGTAAACGGGTGGGACAATTGGTGGCCAATTCAGGTTTACGAAGGCTTGGAGTTTCGAATGTGTCTTCATTTGAAAGCTCAATCTTCGACCATTCAGCAAATAATTTGTCGGCATCCATCTCCTTGATTTCTCGGTACAGACACTATGAATGTAGGCAGATCTCTCAGCTTGTGAAATCTAACGGAAAGCGATTGTTTCTAGTCGACACATTAGCCCTAGTAATTTCGCTCTCTTTATTCATTGCTTTTTCTCAGTATTGTTGCATCTTTCTATTGATTTCTGAAGGAAGATGGAGTGAAAATTTGAGAATCTCTTCTGCACGTTCATTAGGGGTTTTGGTAAGTGATTTAATTTATTTTCATCCAGGTTAGAAAATTGGAAGGTCAAGGGGTGCCCTCAAATCAAGCTGAGGCAATTACTGCTGCCATTACTGAAGTGCTAAATGACAGCTTGGAAAATATATCTCATTCATTTGTTTCAAAGGGGGAGATGCAGAAAGTGAGTTCCTATATACTCTACTTTTACATATTTTCAATTCTGCTTATGTTGGTATGGTTCAATGATGACAATATTCGATAACATCTATTTTTTAATTGTTCGCAATCTAACCAACCGTTGAATGTATATTGTCATCTGTTTGTAGATTGAAATGATCCAGGATTCAAATTTGTCAAAATTCAAATCTGAAGTTCAAAGTTCACAGGTACCAATTTCTATCGCTTGTCTAACTAGTGTACTTCTTATACACCAATAGCTTGCATGATGGTCAAATAAAGAGTAATATTTGAATTTCTCATCTTTCTGTATTTTGCAGACTTGTTCTATGACTCTATCCTAGTTTAATTTCATCGTCTGATTAGATGACTTAGATGATAGTATCTATTTATAATACTCCATAATTTTTTTGGTTTAACAACAAAATAGAGGGAGAATCCTTACATTGAAAATGTCTGACAATATATACTCGAGAATGTTGTAGTTCTTGAACAGAATAGAAATATTCCAGACTGACGTGATGATATACCACTCCTAATTTCCTATTTCTTCCAATACGTGAAATAATTAACGGTGTGTATTTTGAATAATGGGAATGGAGTGGTTGGGTGGGGGGGTAAAGCTTCTTGGGGCATGGGAATTTTTTACAGCCAGTTTATGTCATGTTAAAGAGGCTATCTGGCTGAATTTTTTATAACTGAACTTGCTAGTGAAAGTAAGATAGTTATTGCCCTGAAACTTTACCTGCCTTGTAGCCTACAAAATTTGTATTTGGCCATTGTTTACTCTCAGTGGTTTTTTTCAAGATACCATGGTGTTTGCCGTGTAGGAACTTAATATTTTTGTCACCATGGACGTGAAACTCCCATATGCTACTGGTAGGAGTTTTACTTGATTTGACTTTTGAGGAGTTTTAGAAAAAAACAAGTACAAAGGAATCCTATTTCGTCTTTCATTTTGCTTACTGCTTCTTCTGCTAGTTTACTTTGCAACAAGTTTCTTTACAATGTTGGATTGTTGTTTATGTTCATTGACCATTGGATTGAACACACGGGCATGTAGGGGCACCATTTTTCTTTATTGGGACATGAGACTGAAAAACTCCGAAATGATATTGAGAAGATGCGCAGTGAGCTGAGGTCTGTTTTACTGAACCTCGGTTTATAGTAAATGTATACTAGCTTCAAATTTAGACATTAACTTGTACTCTCTTAAATTAATCTTATTTGTGCAAAGACCTTTGACTACAATGTAGGTATGAAATTGACAAAGTCACTGCTGGACAGCGATTAGACTTGAATCTTGAAAGAGGGTAAGCATTACTTTTTCATGTAAAAGAAGCATGTCAAGTCAGTTTGTTAGTGTAGAGCACATTTTGGTTTAATTTTACATTTTCTTACAAGTTCTATTGCTCATAAATGCAGGAGGATTCGGGATGAGCTAGCTAATCAGAATGCTGAAACAACCAACCTAACTAACAAACTTGATCGGGTAAGACCAACCACTTGTGAAGAGGATGTTGGACAATTAAATAAAATGTTTTTTCTTTAATAAGTTGCAGAAAAACATATTTATTTTGTAGGTATATAGTTTATAGAGGTTAACCTGCAGTTTCAAAGATGGTTTTAAAACTTAAGAGCTTATCTAACATGAGTTATGTTGCTCATATAAAACTCATCAAACTCTTAGGAGGTGTTTAGCCTTCCAACTTCATATGAATGTCGGTATTAGAATACTCCCAACTCCACCAACTTCAACATTATTCTTTTTAATCTTTCCACATCTTCTCCGTTTTCTCTCTTTAATTTTTCCTTACTTTCCTAACACTAACTTCTTAGCTCCAAACTTAAGAATTCAACCCAACACGAAGTAAATATAGACTTTGACTTGTGAAGTATTAACACCAGCAAGCTGCAAACTCCTTGAAACTATGTTATATTATTTTACTTGGGAGAGCTAAAACTAATCACATTCCAAACATTAATTGTTGTTCATCAACATTTCAGGAAATTCATGGTCTGAGGGCACAGCTAGAAGCTGCAAAATACGATGTAATAAAATACTGCATTGGAACGCTCGTTTCCATTTCTGCTGTTGGTCTGGCTGTACTTCGCATCTTAATGTAAACATTTGAAGTCAGCTGAAGTTCTGATAGAGATTCGAAATCATAACTGGTTTGGGATTCATCCCGAATTTGACAAGGTGACATTTATTTCTATTTTTTCTTTAACCATATTTTAGAGAGGATTCTTGGAAGTTCAGTTATTTTCTCCGAGAGAGTTTCCATTTATTATTTTGTTTTCTCATGGAAATGGATCTCGACGTAGCCATTTGAATTGTACTTAATACTTGTTTCAGATGATGATAGTGATAATAAACATTGTTGTAAAGACTTTCTTTTGGTTTGATGAAACTGTTCAAAAGTTCAAAGCACCCATATTGTTGTATTTATTTTCCATATTCTCTTCCACTTTTATAATTATAGTCCCACTGTAATTCCCTTTTTTTGTTTAAATTTTATTTTAACGTGACAAAAGTTAAAAGTCCCAATGTTATTATATATATATATATATATTAATTCAAGAAAATCCTAATTAATTCTCACATTTTGCTTTGTTTCTATGCCAACGTACCTTTGACGATATAACTTGATTTAGAAATGGTATCAAATTGACTCATCTTTAAAGGATGTTATTAAAAAAT ATGTTCGGAATGTTGCCGCAGAGTCGAATGGCCGCTGGTGCGGCTTGTAAACGGGTGGGACAATTGGTGGCCAATTCAGGTTTACGAAGGCTTGGAGTTTCGAATGTGTCTTCATTTGAAAGCTCAATCTTCGACCATTCAGCAAATAATTTGTCGGCATCCATCTCCTTGATTTCTCGGTACAGACACTATGAATGTAGGCAGATCTCTCAGCTTGTGAAATCTAACGGAAAGCGATTGTTTCTAGTCGACACATTAGCCCTAGTTAGAAAATTGGAAGGTCAAGGGGTGCCCTCAAATCAAGCTGAGGCAATTACTGCTGCCATTACTGAAGTGCTAAATGACAGCTTGGAAAATATATCTCATTCATTTGTTTCAAAGGGGGAGATGCAGAAAATTGAAATGATCCAGGATTCAAATTTGTCAAAATTCAAATCTGAAGTTCAAAGTTCACAGGGGCACCATTTTTCTTTATTGGGACATGAGACTGAAAAACTCCGAAATGATATTGAGAAGATGCGCAGTGAGCTGAGGTATGAAATTGACAAAGTCACTGCTGGACAGCGATTAGACTTGAATCTTGAAAGAGGGAGGATTCGGGATGAGCTAGCTAATCAGAATGCTGAAACAACCAACCTAACTAACAAACTTGATCGGGAAATTCATGGTCTGAGGGCACAGCTAGAAGCTGCAAAATACGATGTAATAAAATACTGCATTGGAACGCTCGTTTCCATTTCTGCTGTTGGTCTGGCTGTACTTCGCATCTTAATGTAA ATGTTCGGAATGTTGCCGCAGAGTCGAATGGCCGCTGGTGCGGCTTGTAAACGGGTGGGACAATTGGTGGCCAATTCAGGTTTACGAAGGCTTGGAGTTTCGAATGTGTCTTCATTTGAAAGCTCAATCTTCGACCATTCAGCAAATAATTTGTCGGCATCCATCTCCTTGATTTCTCGGTACAGACACTATGAATGTAGGCAGATCTCTCAGCTTGTGAAATCTAACGGAAAGCGATTGTTTCTAGTCGACACATTAGCCCTAGTTAGAAAATTGGAAGGTCAAGGGGTGCCCTCAAATCAAGCTGAGGCAATTACTGCTGCCATTACTGAAGTGCTAAATGACAGCTTGGAAAATATATCTCATTCATTTGTTTCAAAGGGGGAGATGCAGAAAATTGAAATGATCCAGGATTCAAATTTGTCAAAATTCAAATCTGAAGTTCAAAGTTCACAGGGGCACCATTTTTCTTTATTGGGACATGAGACTGAAAAACTCCGAAATGATATTGAGAAGATGCGCAGTGAGCTGAGGTATGAAATTGACAAAGTCACTGCTGGACAGCGATTAGACTTGAATCTTGAAAGAGGGAGGATTCGGGATGAGCTAGCTAATCAGAATGCTGAAACAACCAACCTAACTAACAAACTTGATCGGGAAATTCATGGTCTGAGGGCACAGCTAGAAGCTGCAAAATACGATGTAATAAAATACTGCATTGGAACGCTCGTTTCCATTTCTGCTGTTGGTCTGGCTGTACTTCGCATCTTAATGTAA MFGMLPQSRMAAGAACKRVGQLVANSGLRRLGVSNVSSFESSIFDHSANNLSASISLISRYRHYECRQISQLVKSNGKRLFLVDTLALVRKLEGQGVPSNQAEAITAAITEVLNDSLENISHSFVSKGEMQKIEMIQDSNLSKFKSEVQSSQGHHFSLLGHETEKLRNDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHGLRAQLEAAKYDVIKYCIGTLVSISAVGLAVLRILM* Homology
BLAST of CsaV3_4G005310.1 vs. NCBI nr
Match: XP_011653145.1 (protein FMP32, mitochondrial isoform X1 [Cucumis sativus] >KGN53276.1 hypothetical protein Csa_014890 [Cucumis sativus]) HSP 1 Score: 482.3 bits (1240), Expect = 2.7e-132 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. NCBI nr
Match: XP_008453713.1 (PREDICTED: protein FMP32, mitochondrial-like isoform X1 [Cucumis melo]) HSP 1 Score: 480.7 bits (1236), Expect = 7.9e-132 Identity = 257/258 (99.61%), Postives = 257/258 (99.61%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. NCBI nr
Match: XP_038876775.1 (protein FMP32, mitochondrial-like isoform X1 [Benincasa hispida]) HSP 1 Score: 474.9 bits (1221), Expect = 4.3e-130 Identity = 255/258 (98.84%), Postives = 257/258 (99.61%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. NCBI nr
Match: XP_031740576.1 (protein FMP32, mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 464.5 bits (1194), Expect = 5.8e-127 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. NCBI nr
Match: XP_008453714.1 (PREDICTED: protein FMP32, mitochondrial-like isoform X2 [Cucumis melo]) HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126 Identity = 248/249 (99.60%), Postives = 248/249 (99.60%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy Swiss-Prot
Match: P43557 (Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FMP32 PE=1 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 6.7e-17 Identity = 46/166 (27.71%), Postives = 97/166 (58.43%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy Swiss-Prot
Match: Q6DJ87 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Xenopus tropicalis OX=8364 GN=ccdc90b PE=2 SV=2) HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14 Identity = 56/211 (26.54%), Postives = 104/211 (49.29%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy Swiss-Prot
Match: Q9GZT6 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Homo sapiens OX=9606 GN=CCDC90B PE=1 SV=2) HSP 1 Score: 79.7 bits (195), Expect = 5.3e-14 Identity = 54/196 (27.55%), Postives = 98/196 (50.00%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy Swiss-Prot
Match: O14042 (Protein fmp32, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fmp32 PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 2.0e-13 Identity = 47/175 (26.86%), Postives = 96/175 (54.86%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy Swiss-Prot
Match: Q8C3X2 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Mus musculus OX=10090 GN=Ccdc90b PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.6e-13 Identity = 51/196 (26.02%), Postives = 100/196 (51.02%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy TrEMBL
Match: A0A0A0KZG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043920 PE=4 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy TrEMBL
Match: A0A1S3BWD9 (protein FMP32, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494361 PE=4 SV=1) HSP 1 Score: 480.7 bits (1236), Expect = 3.8e-132 Identity = 257/258 (99.61%), Postives = 257/258 (99.61%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy TrEMBL
Match: A0A1S3BX04 (protein FMP32, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494361 PE=4 SV=1) HSP 1 Score: 463.0 bits (1190), Expect = 8.2e-127 Identity = 248/249 (99.60%), Postives = 248/249 (99.60%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy TrEMBL
Match: A0A6J1C4U0 (protein FMP32, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008484 PE=4 SV=1) HSP 1 Score: 437.6 bits (1124), Expect = 3.7e-119 Identity = 236/255 (92.55%), Postives = 242/255 (94.90%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. ExPASy TrEMBL
Match: A0A6J1EU49 (protein FMP32, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435941 PE=4 SV=1) HSP 1 Score: 437.6 bits (1124), Expect = 3.7e-119 Identity = 239/256 (93.36%), Postives = 245/256 (95.70%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. TAIR 10
Match: AT2G16460.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 316.6 bits (810), Expect = 1.8e-86 Identity = 173/219 (79.00%), Postives = 191/219 (87.21%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. TAIR 10
Match: AT3G51090.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 304.7 bits (779), Expect = 7.2e-83 Identity = 173/251 (68.92%), Postives = 197/251 (78.49%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. TAIR 10
Match: AT2G16460.2 (Protein of unknown function (DUF1640) ) HSP 1 Score: 214.5 bits (545), Expect = 9.8e-56 Identity = 118/159 (74.21%), Postives = 133/159 (83.65%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. TAIR 10
Match: AT2G35090.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10 Identity = 49/176 (27.84%), Postives = 84/176 (47.73%), Query Frame = 0
BLAST of CsaV3_4G005310.1 vs. TAIR 10
Match: AT2G35070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube development, pollen development; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT2G35090.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 9.0e-09 Identity = 47/172 (27.33%), Postives = 79/172 (45.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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