CsaV3_4G005060.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005060.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUSG protein
Locationchr4: 3300708 .. 3301710 (-)
Sequence length113
RNA-Seq ExpressionCsaV3_4G005060.1
SyntenyCsaV3_4G005060.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGTCTATCTTCAACCAACCGCCATCAACTGCTTCTCGGATTTCTCTGATTTCGCGCCGTTTAAGCCAAGGTAATTCCTAATGATTTTTTTGCATATTGAACAAACCTCACGAGAAAGAAAATCTTTATTCACTATCTGCATCAATACTTAACAATCAATTCCTAAATATTCTCTTTATTTATCTTCACAATTTCACACTTTTTATTATTTGTATAATGAACACAACCATCGTCTGCTTTTCTAATCAATACGTATCGTCTCTAATTACCAATTTTCATTTCAAAGATTTTAGGCCTAGTGCCAAAAAAATATTTGTTTATTAAACTTGTTCGGCAGTAATTTTCTGATGTGCAGGGTCATATGGATAATAAATTCACAATGATTCACCTTTGCATTCATGCCTTTACATTTATTGTCTTTATGATTTTCTAAAGCTTAAAAGTAAATGTGTGTAAGAATACACCTTTGCATTTATGCCTTTCGGGTTATTCGTCTTTTCTGATAACATTTAATGCCTTCATGATTTTCTAAAGTTTAAAAGTAAATGTGTAAGAACATATATTCTAATCGCGATTGTAAGCAAGGTTTCTTTTGATTCTTACCGTTCGTGAATGCGGCCATTCTCGACTACTTACTACACAATACATATCTTCTATCCAATTCGTCATATAACTATCAATTTTGTGCATTTTATTCTGGGATTCTTTTTCTTGCCAAGGATGACTTTTTCAGAACAATTTGTTGTAGAAGATTTGGTTTGTATTTTAGATCTTCCATTGGTCTGTCCTGTAAGATAATTCAGTATAATTAGTTTAGCTTTGTTAGATGTTTGTTATTATTAGATTGGGGAAATTTCAACACTGCTTGCTCGCTAGCCAAGATTAATCGAGGATTTTACAAGCTACTTGGCGTTGGAGAATGGTTATTGCTCGTGGGTGAATGGAAGATAAAATCTGGAACAAGTATCACTCGTCTCTGCCGAGTCTTTTCATTAATGGAAG

mRNA sequence

TTCGTCTATCTTCAACCAACCGCCATCAACTGCTTCTCGGATTTCTCTGATTTCGCGCCGTTTAAGCCAAGATTGGGGAAATTTCAACACTGCTTGCTCGCTAGCCAAGATTA

Coding sequence (CDS)

TTCGTCTATCTTCAACCAACCGCCATCAACTGCTTCTCGGATTTCTCTGATTTCGCGCCGTTTAAGCCAAGATTGGGGAAATTTCAACACTGCTTGCTCGCTAGCCAAGATTA

Protein sequence

FVYLQPTAINCFSDFSDFAPFKPRLGKFQHCLLASQDX
Homology
[Close]
BLAST of CsaV3_4G005060.1 vs. ExPASy TrEMBL
Match: A0A0A0KUC9 (USG protein OS=Cucumis sativus OX=3659 GN=Csa_4G038680 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-05
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1  FVYLQPTAINCFSDFSDFAPFKPR 25
          FVYLQPTAINCFSDFSDFAPFKPR
Sbjct: 9  FVYLQPTAINCFSDFSDFAPFKPR 32

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005060.1 vs.
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005060.1 vs.
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005060.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUC93.4e-05100.00USG protein OS=Cucumis sativus OX=3659 GN=Csa_4G038680 PE=4 SV=1[more]
BLAST of CsaV3_4G005060.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G005060CsaV3_4G005060gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G005060.1.exon2CsaV3_4G005060.1.exon2exon
CsaV3_4G005060.1.exon1CsaV3_4G005060.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G005060.1.cds2CsaV3_4G005060.1.cds2CDS
CsaV3_4G005060.1.cds1CsaV3_4G005060.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G005060.1CsaV3_4G005060.1-proteinpolypeptide