CsaV3_3G031090.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G031090.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DUF4219 domain-containing protein
Location	chr3: 26869385 .. 26872195 (-)
Sequence length	321
RNA-Seq Expression	CsaV3_3G031090.1
Synteny	CsaV3_3G031090.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCGTTGGATAACAGCACCACCAGCCCATTAGTATCGTTCTAAAGCCCACACAGCTTTCCAATTGCCCATTATCTCAACTGAAGCCCATCCACTGGAAACCAATCTCAGGCCTACTAAAGCAATAGAAATATTTTGAAAAATAACTTCTTTCTACGTGATTTTACACAAATGTCTTCATTAACATTTCGTAACTTTTAACTATCATTTTATCATTCTAATATTTATTTTTAAAAATATATAATAATATAATATCATAATTATATGATATCACATCTATTCTCTATTTTATAACTTATCTAATTAATATAATAAATAATTAGATTTTTATTTTTATTTAATAATAGGATATACATTCAATTTTAATATGGTAAAAAATTGAGTTAAATACGGTAATAATATATTAAATAATTTCTACAAAATGAATAACTTTATCTTTAATAAACTTCATACGACGTCATAATTTCACATTCTTCTTTCACCTTTTTAGTGTCTTCCATCGATCAATTTAGTTGTCCTACCTTTCTGATCTATCTTTATGTCCTATTTTTCTTGTTCAACACTTCTTATTCGACTCACCTCCTTCAAGTATGTCTGGTGAGTCCATATTTCTTTCTCTTTTATGTTTATGTAAATTTTGTCATATGTAATTTCAGTTTGATTTTCTATTGAAATTTTTTGTAAATAAAAAGCACAGGGAATGCATACTTTGGTTATCTCCTTAACTAATTTTTTTATGTTATTAATTATTTTGTTTCATAAATTGTGAAGTATAGTATATAGTTATAACCAATGTATTTTCTCTTTATTATTTAAATAGTATCGTGCAATTATTATTATACACTATTTCATATCTAATATAATTTTGGATCAATATATACTCTTTCATGTATAGAATATTACATTAGAACTGACACATATACTTATACTATTTATATCATGTATGGACAAAATTGCAATATATTTTGGTTGTATCTTCAATGACTTTTTGGAATGCATATTTAAAACAATTCTTTGTTGTGACCTATATATACACTTGTATATTTAAAATAATATGTAAGCAGTAACACATATAGTTCTATTATTTCTTGTCAGGAATGGTCGAAATTGTTGTATATTACGATGATCATCTCCTTCAACTAATTGTTTCATGTTATTAATTTTCTTCCATAAATTATGTAATATAGTATACAATATGTAATAATTTTTTTCCCTTCATATTTAATACTACTGTATGGTTAATGAACTTCTTCTTTAAGTTTATGAACTTTGAACCATTTATTTATTTTTAAGATCAATGGTACACCCTGCAAACATACAACATAAAAAATATTATATAGTTTCACTATAGATCATACATTATTAAACATTAAACATCGCACACATAATATATATTTAAGTAACATACACATAATGTTTCATATAAGTTATAGTATATATTAAATACCATTAAGCATTAAGTATTAAACACCGCACAAATAATATATTATTAAGCAGCAGACACATTATATATTATATATTATACAGTAGTATATATAAAATATCATTAGCAATACATTTTCCTAATTGTATTGATATAAATTTGTACTTTCATAGAACGTAAAGTTTGTTTCAAAATTAAAGTACAATGTAAAATATGCACGTATACATTGTTATTTAATATTATGTTAAATATACATGAGTATATAATGTTCTATTTAAATCGAAAACAGTTTAAGTCACACTAAGATTTTATCAATTAACTTTCAATATATGAAATTCAATGCAAATTTGATGGAAATATAAAAAGTATATATAAGAAATTATTAAATTACATGGAATATATGAAAAATAATGTAAAACAAAAGAAAATGATGTGGTATATATATTTGCCTGCCTGTAAATATGAGTATATACTGTAAGTTACGTAACTTATATGCTCGTTTCATTGAAATTTTGCTTTATGGGAAAAAATTACAGAAATTTTTTACAATTTCATACACATAATTAATTAATATGAAACAAATATGCACTCATTGAAAAAAATTGAAGGAAAGGAACATAACGAAGAAGAATGAATTGGGAGAGAGATTGGACGAAAGAATTTTTTTTAACAAAATCACCGAAACAAAAATAATTAAGTGGTAATTTTGATTATAATATTATCATAATAGAATTAATCACGTAACATATTTACATATGATATTTAATAAATGCAAATCTTAATCACATTGAATGATCTAATTAAGAGGTGGAATAGAATAACCGGGTTAGTAGTTTGGTGTTTTGTATGGAGGAGTGATTCAAAGTGAGATGACGATAACGTTTAAGTATTTTATTTTATTATGGTCTTAGTTTAGATCCTAAATTATTGGGACTTTGATGATTTAGCTTTTACTATTTGTGTTAGTGGGTTGTTGATTGAGCCAAGTGAATGGGTAAGTTAGTAGAGTATGTAACCTGAGTTTATTATTTTTAGCAATAGTCTCTTGTTGTAAGTCTATAATAAGGCACATAAATTGTTTGTTTATTTATGCAAAAAAGAAGAAGAAAGAAGCAAACATTCTTGGTCCAAACACATTGAGAGAAAAGATAGGCAGCAATGACAATGCTATGAGTACAGCACAACCACTCATTCTGATCTTCAAACGAGAAAGCTACGAATTTTGGAGTTTTCGTATGAAGACTCTTCTCAAATTTCAAGACTTATGGAAGGAACAAGGGTATGTGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGATGAAGAAGGACTCAAAGGTGTTGGTGATCATTCAACAAGCAATCCATGACATCGTTTTTTTGTGA

mRNA sequence

ATGGGGGCGTTGGATAACAGCACCACCAGCCCATTAAAGAAGAAAGAAGCAAACATTCTTGGTCCAAACACATTGAGAGAAAAGATAGGCAGCAATGACAATGCTATGAGTACAGCACAACCACTCATTCTGATCTTCAAACGAGAAAGCTACGAATTTTGGAGTTTTCGTATGAAGACTCTTCTCAAATTTCAAGACTTATGGAAGGAACAAGGGTATGTGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGATGAAGAAGGACTCAAAGGTGTTGGTGATCATTCAACAAGCAATCCATGACATCGTTTTTTTGTGA

Coding sequence (CDS)

ATGGGGGCGTTGGATAACAGCACCACCAGCCCATTAAAGAAGAAAGAAGCAAACATTCTTGGTCCAAACACATTGAGAGAAAAGATAGGCAGCAATGACAATGCTATGAGTACAGCACAACCACTCATTCTGATCTTCAAACGAGAAAGCTACGAATTTTGGAGTTTTCGTATGAAGACTCTTCTCAAATTTCAAGACTTATGGAAGGAACAAGGGTATGTGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGATGAAGAAGGACTCAAAGGTGTTGGTGATCATTCAACAAGCAATCCATGACATCGTTTTTTTGTGA

Protein sequence

MGALDNSTTSPLKKKEANILGPNTLREKIGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWKEQGYVDPDDEGKLREKMKKDSKVLVIIQQAIHDIVFL*

Homology

[Close]

BLAST of CsaV3_3G031090.1 vs. NCBI nr
Match: KGN58648.2 (hypothetical protein Csa_001130 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 2.2e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MGALDNSTTSPLKKKEANILGPNTLREKIGSNDNAMSTAQPLILIFKRESYEFWSFRMKT 60
           MGALDNSTTSPLKKKEANILGPNTLREKIGSNDNAMSTAQPLILIFKRESYEFWSFRMKT
Sbjct: 1   MGALDNSTTSPLKKKEANILGPNTLREKIGSNDNAMSTAQPLILIFKRESYEFWSFRMKT 60

Query: 61  LLKFQDLWKEQGYVDPDDEGKLREKMKKDSKVLVIIQQAIHDIVFL 107
           LLKFQDLWKEQGYVDPDDEGKLREKMKKDSKVLVIIQQAIHDIVFL
Sbjct: 61  LLKFQDLWKEQGYVDPDDEGKLREKMKKDSKVLVIIQQAIHDIVFL 106

[Close]

BLAST of CsaV3_3G031090.1 vs. NCBI nr
Match: KAA0063655.1 (DUF4219 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-25
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN NAMSTAQPLI IFK E YEFWS RMKTLLK QDLW   EQGY DPDDEGKLRE  
Sbjct: 1   MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60

Query: 89  KKDSKVLVIIQQAIHDIVF 106
           KKDSK LVIIQQA+HD +F
Sbjct: 61  KKDSKALVIIQQAVHDSIF 79

[Close]

BLAST of CsaV3_3G031090.1 vs. NCBI nr
Match: TYK18372.1 (DUF4219 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-25
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN NAMSTAQPLI IFK E YEFWS RMKTLLK QDLW   EQGY DPDDEGKLRE  
Sbjct: 1   MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60

Query: 89  KKDSKVLVIIQQAIHDIVF 106
           KKDSK LVIIQQA+HD +F
Sbjct: 61  KKDSKALVIIQQAVHDSIF 79

[Close]

BLAST of CsaV3_3G031090.1 vs. NCBI nr
Match: KAA0032274.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN NAM TAQPLI IFK E YEFWS RMKTLL+ QDLW   EQGY DPDDEG LRE  
Sbjct: 1   MGSNGNAMGTAQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDLVEQGYADPDDEGTLRENR 60

Query: 89  KKDSKVLVIIQQAIHDIVF 106
           KKDSK LVIIQQA+HD VF
Sbjct: 61  KKDSKALVIIQQAVHDSVF 79

[Close]

BLAST of CsaV3_3G031090.1 vs. NCBI nr
Match: KAA0059767.1 (DUF4219 domain-containing protein [Cucumis melo var. makuwa] >TYJ99780.1 DUF4219 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 58/80 (72.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN NAM TAQPLI IFK E YEFWS R+KTLL+ QDLW   EQGY DPDD+G L+E  
Sbjct: 1   MGSNGNAMGTAQPLIPIFKGEGYEFWSIRIKTLLRSQDLWNLVEQGYADPDDKGMLQENR 60

Query: 89  KKDSKVLVIIQQAIHDIVFL 107
           KKDSK LVIIQQA+HD VFL
Sbjct: 61  KKDSKALVIIQQAVHDSVFL 80

[Close]

BLAST of CsaV3_3G031090.1 vs. ExPASy TrEMBL
Match: A0A5A7VCL4 (DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001700 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.7e-25
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN NAMSTAQPLI IFK E YEFWS RMKTLLK QDLW   EQGY DPDDEGKLRE  
Sbjct: 1   MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60

Query: 89  KKDSKVLVIIQQAIHDIVF 106
           KKDSK LVIIQQA+HD +F
Sbjct: 61  KKDSKALVIIQQAVHDSIF 79

[Close]

BLAST of CsaV3_3G031090.1 vs. ExPASy TrEMBL
Match: A0A5D3D4A6 (DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00930 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.7e-25
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN NAMSTAQPLI IFK E YEFWS RMKTLLK QDLW   EQGY DPDDEGKLRE  
Sbjct: 1   MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60

Query: 89  KKDSKVLVIIQQAIHDIVF 106
           KKDSK LVIIQQA+HD +F
Sbjct: 61  KKDSKALVIIQQAVHDSIF 79

[Close]

BLAST of CsaV3_3G031090.1 vs. ExPASy TrEMBL
Match: A0A5A7SM62 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001140 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN NAM TAQPLI IFK E YEFWS RMKTLL+ QDLW   EQGY DPDDEG LRE  
Sbjct: 1   MGSNGNAMGTAQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDLVEQGYADPDDEGTLRENR 60

Query: 89  KKDSKVLVIIQQAIHDIVF 106
           KKDSK LVIIQQA+HD VF
Sbjct: 61  KKDSKALVIIQQAVHDSVF 79

[Close]

BLAST of CsaV3_3G031090.1 vs. ExPASy TrEMBL
Match: A0A5A7UYP1 (DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00190 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 58/80 (72.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN NAM TAQPLI IFK E YEFWS R+KTLL+ QDLW   EQGY DPDD+G L+E  
Sbjct: 1   MGSNGNAMGTAQPLIPIFKGEGYEFWSIRIKTLLRSQDLWNLVEQGYADPDDKGMLQENR 60

Query: 89  KKDSKVLVIIQQAIHDIVFL 107
           KKDSK LVIIQQA+HD VFL
Sbjct: 61  KKDSKALVIIQQAVHDSVFL 80

[Close]

BLAST of CsaV3_3G031090.1 vs. ExPASy TrEMBL
Match: A0A5A7TZP7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00180 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 58/79 (73.42%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 29  IGSNDNAMSTAQPLILIFKRESYEFWSFRMKTLLKFQDLWK--EQGYVDPDDEGKLREKM 88
           +GSN N M T QPLI IFK E YEFWS  MKTLL+ QDLW   EQGYVDPDD+GKLRE  
Sbjct: 1   MGSNGNGMGTTQPLIPIFKGEGYEFWSIPMKTLLRSQDLWDLVEQGYVDPDDKGKLRENK 60

Query: 89  KKDSKVLVIIQQAIHDIVF 106
           KKDSK LVIIQQA+HD VF
Sbjct: 61  KKDSKALVIIQQAVHDSVF 79

The following BLAST results are available for this feature:

BLAST of CsaV3_3G031090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58648.2	2.2e-51	100.00	hypothetical protein Csa_001130 [Cucumis sativus]	[more]
KAA0063655.1	7.7e-25	78.48	DUF4219 domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK18372.1	7.7e-25	78.48	DUF4219 domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0032274.1	2.5e-23	75.95	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0059767.1	2.1e-22	72.50	DUF4219 domain-containing protein [Cucumis melo var. makuwa] >TYJ99780.1 DUF4219...	[more]

BLAST of CsaV3_3G031090.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G031090.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCL4	3.7e-25	78.48	DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D4A6	3.7e-25	78.48	DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SM62	1.2e-23	75.95	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UYP1	1.0e-22	72.50	DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TZP7	1.3e-22	73.42	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CsaV3_3G031090.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G031090	CsaV3_3G031090	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G031090.1.exon2	CsaV3_3G031090.1.exon2	exon
CsaV3_3G031090.1.exon1	CsaV3_3G031090.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G031090.1.cds2	CsaV3_3G031090.1.cds2	CDS
CsaV3_3G031090.1.cds1	CsaV3_3G031090.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G031090.1	CsaV3_3G031090.1-protein	polypeptide