CsaV3_3G021250.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021250.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 18047780 .. 18048049 (-)
Sequence length270
RNA-Seq ExpressionCsaV3_3G021250.1
SyntenyCsaV3_3G021250.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGACGAAAGCGGAACAAAACCCTCAGTTGGAATATGGAAAGTCGTGGCGGTGTGGAACGGTTGCAGACGTCACGACGGCACAAAACGTGAGGCAGAAGACTTGTGCAAGCTGAGCAACGCGAATTTCCGAGCAGTGCGACTAGCAGAAGATGACGGACAGTGTGTTGAAGTGGCTCGAGCGATTGCGGATCTGGACAGCAGGGAGGCACTGACGAACCGCGACGAGCAGTTGGGGGTTTGGGTAACGGCGGCGCCAGAAAAATGA

mRNA sequence

ATGGTTGACGAAAGCGGAACAAAACCCTCAGTTGGAATATGGAAAGTCGTGGCGGTGTGGAACGGTTGCAGACGTCACGACGGCACAAAACGTGAGGCAGAAGACTTGTGCAAGCTGAGCAACGCGAATTTCCGAGCAGTGCGACTAGCAGAAGATGACGGACAGTGTGTTGAAGTGGCTCGAGCGATTGCGGATCTGGACAGCAGGGAGGCACTGACGAACCGCGACGAGCAGTTGGGGGTTTGGGTAACGGCGGCGCCAGAAAAATGA

Coding sequence (CDS)

ATGGTTGACGAAAGCGGAACAAAACCCTCAGTTGGAATATGGAAAGTCGTGGCGGTGTGGAACGGTTGCAGACGTCACGACGGCACAAAACGTGAGGCAGAAGACTTGTGCAAGCTGAGCAACGCGAATTTCCGAGCAGTGCGACTAGCAGAAGATGACGGACAGTGTGTTGAAGTGGCTCGAGCGATTGCGGATCTGGACAGCAGGGAGGCACTGACGAACCGCGACGAGCAGTTGGGGGTTTGGGTAACGGCGGCGCCAGAAAAATGA

Protein sequence

MVDESGTKPSVGIWKVVAVWNGCRRHDGTKREAEDLCKLSNANFRAVRLAEDDGQCVEVARAIADLDSREALTNRDEQLGVWVTAAPEK*
Homology
BLAST of CsaV3_3G021250.1 vs. NCBI nr
Match: KAE8650606.1 (hypothetical protein Csa_011444 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 6.2e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MVDESGTKPSVGIWKVVAVWNGCRRHDGTKREAEDLCKLSNANFRAVRLAEDDGQCVEVA 60
          MVDESGTKPSVGIWKVVAVWNGCRRHDGTKREAEDLCKLSNANFRAVRLAEDDGQCVEVA
Sbjct: 1  MVDESGTKPSVGIWKVVAVWNGCRRHDGTKREAEDLCKLSNANFRAVRLAEDDGQCVEVA 60

Query: 61 RAIADLDSREALTNRDEQLGVWVTAAPEK 90
          RAIADLDSREALTNRDEQLGVWVTAAPEK
Sbjct: 61 RAIADLDSREALTNRDEQLGVWVTAAPEK 89

BLAST of CsaV3_3G021250.1 vs. NCBI nr
Match: KAE8645914.1 (hypothetical protein Csa_011890 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 5.5e-40
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0

Query: 1  MVDESGTKPSVGIWKVVAVWNGCRRHDGTKREAEDLCKLSNANFRAVRLAEDDGQCVEVA 60
          MVDESGTKPSVGIWKVVAVW GC RHDGTKREAEDLCKLSNA+F+AVRLAEDDGQC EVA
Sbjct: 1  MVDESGTKPSVGIWKVVAVWYGCERHDGTKREAEDLCKLSNADFQAVRLAEDDGQCDEVA 60

Query: 61 RAIADLDSREALTNRDEQLGVWVTAAPEK 90
          R +ADLDSREALTNRDEQLGVWVTAAPEK
Sbjct: 61 RVVADLDSREALTNRDEQLGVWVTAAPEK 89

BLAST of CsaV3_3G021250.1 vs. NCBI nr
Match: KAE8648141.1 (hypothetical protein Csa_018336 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 7.9e-39
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0

Query: 1  MVDESGTKPSVGIWKVVAVWNGCRRHDGTKREAEDLCKLSNANFRAVRLAEDDGQCVEVA 60
          MVDESGTKP VGIWKVVAVWNGC RHD TKREAEDLCKLSNA+FRAV+LAEDDGQC EVA
Sbjct: 1  MVDESGTKPLVGIWKVVAVWNGCERHDDTKREAEDLCKLSNADFRAVQLAEDDGQCDEVA 60

Query: 61 RAIADLDSREALTNRDEQLGVWVTAAPEK 90
          R +ADLDSREALTN DEQLGVWVTAAPEK
Sbjct: 61 RVVADLDSREALTNHDEQLGVWVTAAPEK 89

BLAST of CsaV3_3G021250.1 vs. NCBI nr
Match: KAE8646609.1 (hypothetical protein Csa_005265, partial [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 7.4e-37
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MVDESGTKPSVGIWKVVAVWNGCRRHDGTKREAEDLCKLSNANFRAVRLAEDDGQCVEVA 60
          MVDESGTKPSVGIWKVVAVWNGC RHDGTKREAEDLCKLSNANFRA+RLAEDDGQC EVA
Sbjct: 1  MVDESGTKPSVGIWKVVAVWNGCGRHDGTKREAEDLCKLSNANFRAMRLAEDDGQCDEVA 60

Query: 61 RAIADLDSREALTNRDEQLGVW 83
          R IADLD REALTNRDEQLGVW
Sbjct: 61 RTIADLDRREALTNRDEQLGVW 82

BLAST of CsaV3_3G021250.1 vs. NCBI nr
Match: KAE8646608.1 (hypothetical protein Csa_005706 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-22
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 30 KREAEDLCKLSNANFRAVRLAEDDGQCVEVARAIADLDSREALTNRDEQLGVWVTAAPEK 89
          KREAEDLCKLSNANFRA+RLAEDDGQC EVAR IADLD REALTNRDEQLGVWVTAAPEK
Sbjct: 20 KREAEDLCKLSNANFRAMRLAEDDGQCDEVARTIADLDRREALTNRDEQLGVWVTAAPEK 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650606.16.2e-44100.00hypothetical protein Csa_011444 [Cucumis sativus][more]
KAE8645914.15.5e-4092.13hypothetical protein Csa_011890 [Cucumis sativus][more]
KAE8648141.17.9e-3989.89hypothetical protein Csa_018336 [Cucumis sativus][more]
KAE8646609.17.4e-3793.90hypothetical protein Csa_005265, partial [Cucumis sativus][more]
KAE8646608.13.0e-2293.33hypothetical protein Csa_005706 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G021250CsaV3_3G021250gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G021250.1.exon1CsaV3_3G021250.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G021250.1.cds1CsaV3_3G021250.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G021250.1CsaV3_3G021250.1-proteinpolypeptide