CsaV3_3G017410.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G017410.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 13051058 .. 13051289 (+)
Sequence length232
RNA-Seq ExpressionCsaV3_3G017410.1
SyntenyCsaV3_3G017410.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCAATAGACCACGTGGGGACCCACTTGTCCAAGCCATTTCAGACAACGCCCTTTCCCTTCCTTATGTCCATTGTCCATCATCATCACTCATCGCCCATCGCCCATCGCCCATCGCCCATCGCCCCATCCATCTTGCTACCTGGCACCGACTGCCACGCCAGCTGTGCTTTAGTTTCCCCCATTTCTTGTAATTTCACACACCCTTCCCCCGACCCCAATTTCGTAA

mRNA sequence

ATGAAAGCAATAGACCACGTGGGGACCCACTTGTCCAAGCCATTTCAGACAACGCCCTTTCCCTTCCTTATGTCCATTGTCCATCATCATCACTCATCGCCCATCGCCCATCGCCCATCGCCCATCGCCCCATCCATCTTGCTACCTGGCACCGACTGCCACGCCAGCTGTGCTTTAGTTTCCCCCATTTCTTGTAATTTCACACACCCTTCCCCCGACCCCAATTTCGTAA

Coding sequence (CDS)

ATGAAAGCAATAGACCACGTGGGGACCCACTTGTCCAAGCCATTTCAGACAACGCCCTTTCCCTTCCTTATGTCCATTGTCCATCATCATCACTCATCGCCCATCGCCCATCGCCCATCGCCCATCGCCCCATCCATCTTGCTACCTGGCACCGACTGCCACGCCAGCTGTGCTTTAGTTTCCCCCATTTCTTGTAATTTCACACACCCTTCCCCCGACCCCAATTTCGTAA

Protein sequence

MKAIDHVGTHLSKPFQTTPFPFLMSIVHHHHSSPIAHRPSPIAPSILLPGTDCHASCALVSPISCNFTHPSPDPNFVX
Homology
[Close]
BLAST of CsaV3_3G017410.1 vs. NCBI nr
Match: KAE8650466.1 (hypothetical protein Csa_011528, partial [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.0e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MKAIDHVGTHLSKPFQTTPFPFLMSIVHHHHSSPIAHRPSPIAPSILLPGTDCHASCALV 60
          MKAIDHVGTHLSKPFQTTPFPFLMSIVHHHHSSPIAHRPSPIAPSILLPGTDCHASCALV
Sbjct: 1  MKAIDHVGTHLSKPFQTTPFPFLMSIVHHHHSSPIAHRPSPIAPSILLPGTDCHASCALV 60

Query: 61 SPISCNFTHPSPDPNFV 78
          SPISCNFTHPSPDPNFV
Sbjct: 61 SPISCNFTHPSPDPNFV 77

The following BLAST results are available for this feature:
BLAST of CsaV3_3G017410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650466.12.0e-38100.00hypothetical protein Csa_011528, partial [Cucumis sativus][more]
BLAST of CsaV3_3G017410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G017410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G017410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G017410CsaV3_3G017410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G017410.1.exon1CsaV3_3G017410.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G017410.1.cds1CsaV3_3G017410.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G017410.1CsaV3_3G017410.1-proteinpolypeptide