CsaV3_3G013400.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G013400.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 10122078 .. 10122457 (+)
Sequence length219
RNA-Seq ExpressionCsaV3_3G013400.1
SyntenyCsaV3_3G013400.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACAACCTCTAGAGTTGATTATGGGAAGTTCGCTCGTAGAGTTACTAGAGGTGGTGGTGAAAGATTGACCGACAACAATCATTGGAGAAGGTGTCTAAAAGTTGGTTGACGAACTTTCTAACCCTTTGAAAAAGTACCCCGAAAGTTGAAGAATAGTAATAATAGGTGAGTGTTATTTTAAATCCTGACCTTGATCACCAACTAAAGAGTAATTTGGGTTCTGTGTGGGGCGGTGGTGGCAGATAAGCCGGAAAATTTGAAGGATTTGGAAAGGTACAAGGGAATGGCGATGGTGGGATTGTGGTGTATTCGTCCAGATTCAACTCAAAGAACGTCGATGAAGAAGGTCACCCAAATGTTGGAAGGCACCGTTGA

mRNA sequence

ATGGTGACAACCTCTAGAGTTGATTATGGGAAGTTCGCTCGTAGAGTTACTAGAGGTGGTGGTGAAAGATTGACCGACAACAATCATTGGAGAAGAGTAATTTGGGTTCTGTGTGGGGCGGTGGTGGCAGATAAGCCGGAAAATTTGAAGGATTTGGAAAGATTCAACTCAAAGAACGTCGATGAAGAAGGTCACCCAAATGTTGGAAGGCACCGTTGA

Coding sequence (CDS)

ATGGTGACAACCTCTAGAGTTGATTATGGGAAGTTCGCTCGTAGAGTTACTAGAGGTGGTGGTGAAAGATTGACCGACAACAATCATTGGAGAAGAGTAATTTGGGTTCTGTGTGGGGCGGTGGTGGCAGATAAGCCGGAAAATTTGAAGGATTTGGAAAGATTCAACTCAAAGAACGTCGATGAAGAAGGTCACCCAAATGTTGGAAGGCACCGTTGA

Protein sequence

MVTTSRVDYGKFARRVTRGGGERLTDNNHWRRVIWVLCGAVVADKPENLKDLERFNSKNVDEEGHPNVGRHR*
Homology
[Close]
BLAST of CsaV3_3G013400.1 vs. NCBI nr
Match: KGN56993.1 (hypothetical protein Csa_011303 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 7.3e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MVTTSRVDYGKFARRVTRGGGERLTDNNHWRRVIWVLCGAVVADKPENLKDLERFNSKNV 60
          MVTTSRVDYGKFARRVTRGGGERLTDNNHWRRVIWVLCGAVVADKPENLKDLERFNSKNV
Sbjct: 1  MVTTSRVDYGKFARRVTRGGGERLTDNNHWRRVIWVLCGAVVADKPENLKDLERFNSKNV 60

Query: 61 DEEGHPNVGRHR 73
          DEEGHPNVGRHR
Sbjct: 61 DEEGHPNVGRHR 72

[Close]
BLAST of CsaV3_3G013400.1 vs. ExPASy TrEMBL
Match: A0A0A0L5L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147760 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MVTTSRVDYGKFARRVTRGGGERLTDNNHWRRVIWVLCGAVVADKPENLKDLERFNSKNV 60
          MVTTSRVDYGKFARRVTRGGGERLTDNNHWRRVIWVLCGAVVADKPENLKDLERFNSKNV
Sbjct: 1  MVTTSRVDYGKFARRVTRGGGERLTDNNHWRRVIWVLCGAVVADKPENLKDLERFNSKNV 60

Query: 61 DEEGHPNVGRHR 73
          DEEGHPNVGRHR
Sbjct: 61 DEEGHPNVGRHR 72

The following BLAST results are available for this feature:
BLAST of CsaV3_3G013400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56993.17.3e-35100.00hypothetical protein Csa_011303 [Cucumis sativus][more]
BLAST of CsaV3_3G013400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G013400.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5L43.5e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147760 PE=4 SV=1[more]
BLAST of CsaV3_3G013400.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G013400CsaV3_3G013400gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G013400.1.exon1CsaV3_3G013400.1.exon1exon
CsaV3_3G013400.1.exon2CsaV3_3G013400.1.exon2exon
CsaV3_3G013400.1.exon3CsaV3_3G013400.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G013400.1.cds1CsaV3_3G013400.1.cds1CDS
CsaV3_3G013400.1.cds2CsaV3_3G013400.1.cds2CDS
CsaV3_3G013400.1.cds3CsaV3_3G013400.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G013400.1CsaV3_3G013400.1-proteinpolypeptide