CsaV3_2G034510.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G034510.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 22882425 .. 22882685 (+)
Sequence length243
RNA-Seq ExpressionCsaV3_2G034510.1
SyntenyCsaV3_2G034510.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAAGATTGGATGAGATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAATGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTGGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTGAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCTAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTCGTGTGACAACGTGTGA

mRNA sequence

GATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAATGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTGGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTGAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCTAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTCGTGTGACAACGTGTGA

Coding sequence (CDS)

GATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAATGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTGGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTGAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCTAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTCGTGTGACAACGTGTGA

Protein sequence

DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRIRFSCDNV*
Homology
BLAST of CsaV3_2G034510.1 vs. NCBI nr
Match: KAE8652272.1 (hypothetical protein Csa_023982, partial [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQ 60
          DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQ
Sbjct: 1  DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQ 60

Query: 61 GKARGELHDNVRIRFSCDNV 81
          GKARGELHDNVRIRFSCDNV
Sbjct: 61 GKARGELHDNVRIRFSCDNV 80

BLAST of CsaV3_2G034510.1 vs. NCBI nr
Match: KGN45956.1 (hypothetical protein Csa_005118 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 26 LTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRI 74
          + EER+R+C RRD +DEGG RELRRR+ RR C  +GKA GEL D VRI
Sbjct: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRI 48

BLAST of CsaV3_2G034510.1 vs. ExPASy TrEMBL
Match: A0A0A0KDV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038520 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 26 LTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRI 74
          + EER+R+C RRD +DEGG RELRRR+ RR C  +GKA GEL D VRI
Sbjct: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRI 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652272.12.8e-35100.00hypothetical protein Csa_023982, partial [Cucumis sativus][more]
KGN45956.11.0e-0564.58hypothetical protein Csa_005118 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDV45.0e-0664.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038520 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G034510CsaV3_2G034510gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G034510.1.exon1CsaV3_2G034510.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G034510.1.cds1CsaV3_2G034510.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G034510.1CsaV3_2G034510.1-proteinpolypeptide