CsaV3_2G034480.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G034480.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 22846753 .. 22846914 (+)
Sequence length162
RNA-Seq ExpressionCsaV3_2G034480.1
SyntenyCsaV3_2G034480.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCCGTTTGACATGACAACAACCAAGACAGATATTAAAAATGGCAATAATGGAGTCCTAAAAAGGGAACACTCAAAAACTTTGGCCCACCCTCCCTCTTTTATCAAACACACAAAAACCCATCATTTTACAAGGGACAAGCTTTCCCTGATACTCAAGTGA

mRNA sequence

GTCCCGTTTGACATGACAACAACCAAGACAGATATTAAAAATGGCAATAATGGAGTCCTAAAAAGGGAACACTCAAAAACTTTGGCCCACCCTCCCTCTTTTATCAAACACACAAAAACCCATCATTTTACAAGGGACAAGCTTTCCCTGATACTCAAGTGA

Coding sequence (CDS)

GTCCCGTTTGACATGACAACAACCAAGACAGATATTAAAAATGGCAATAATGGAGTCCTAAAAAGGGAACACTCAAAAACTTTGGCCCACCCTCCCTCTTTTATCAAACACACAAAAACCCATCATTTTACAAGGGACAAGCTTTCCCTGATACTCAAGTGA

Protein sequence

VPFDMTTTKTDIKNGNNGVLKREHSKTLAHPPSFIKHTKTHHFTRDKLSLILK*
Homology
[Close]
BLAST of CsaV3_2G034480.1 vs. NCBI nr
Match: KAE8652270.1 (hypothetical protein Csa_022038, partial [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 6.9e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  VPFDMTTTKTDIKNGNNGVLKREHSKTLAHPPSFIKHTKTHHFTRDKLSLILK 54
          VPFDMTTTKTDIKNGNNGVLKREHSKTLAHPPSFIKHTKTHHFTRDKLSLILK
Sbjct: 1  VPFDMTTTKTDIKNGNNGVLKREHSKTLAHPPSFIKHTKTHHFTRDKLSLILK 53

The following BLAST results are available for this feature:
BLAST of CsaV3_2G034480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652270.16.9e-22100.00hypothetical protein Csa_022038, partial [Cucumis sativus][more]
BLAST of CsaV3_2G034480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G034480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G034480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G034480CsaV3_2G034480gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G034480.1.exon1CsaV3_2G034480.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G034480.1.cds1CsaV3_2G034480.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G034480.1CsaV3_2G034480.1-proteinpolypeptide