CsaV3_2G030620.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G030620.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 20153236 .. 20153830 (-)
Sequence length450
RNA-Seq ExpressionCsaV3_2G030620.1
SyntenyCsaV3_2G030620.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGGTAAGATTGAGGTGTTTTTTTCTTTTGTAAGAACAAATGAGAGAGAAAGAGGGAAGGAAGGAAGAGGCCTTTACTTATTTCCTGGACGACTAAAAATGACACAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAACTCATTCGCTCAACCCTATCGTCAACTCTCTTTTTTGACTTTTCCTTGTTTTCCCGCGCAGGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACATTCATCATTAAATCATAATGAACCCTACTCCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGTCGTTCAAGCGCCTGCGTGACAGAGATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTAGGGATGTAGTTTTGTCACCGACCAATGAGGAGAAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

mRNA sequence

ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAACTCATTCGCTCAACCCTATCGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACATTCATCATTAAATCATAATGAACCCTACTCCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGTCGTTCAAGCGCCTGCGTGACAGAGATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTAGGGATGTAGTTTTGTCACCGACCAATGAGGAGAAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

Coding sequence (CDS)

ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAACTCATTCGCTCAACCCTATCGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACATTCATCATTAAATCATAATGAACCCTACTCCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGTCGTTCAAGCGCCTGCGTGACAGAGATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTAGGGATGTAGTTTTGTCACCGACCAATGAGGAGAAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

Protein sequence

MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRGTLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMGCDNMFMFRDVVLSPTNEEKTGRILVKVFD*
Homology
[Close]
BLAST of CsaV3_2G030620.1 vs. NCBI nr
Match: KGN62789.1 (hypothetical protein Csa_021987 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 3.5e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60
           MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG
Sbjct: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60

Query: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120
           TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG
Sbjct: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120

Query: 121 CDNMFMFRDVVLSPTNEEKTGRILVKVFD 150
           CDNMFMFRDVVLSPTNEEKTGRILVKVFD
Sbjct: 121 CDNMFMFRDVVLSPTNEEKTGRILVKVFD 149

[Close]
BLAST of CsaV3_2G030620.1 vs. ExPASy TrEMBL
Match: A0A0A0LP26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372840 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.7e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60
           MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG
Sbjct: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60

Query: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120
           TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG
Sbjct: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120

Query: 121 CDNMFMFRDVVLSPTNEEKTGRILVKVFD 150
           CDNMFMFRDVVLSPTNEEKTGRILVKVFD
Sbjct: 121 CDNMFMFRDVVLSPTNEEKTGRILVKVFD 149

The following BLAST results are available for this feature:
BLAST of CsaV3_2G030620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62789.13.5e-76100.00hypothetical protein Csa_021987 [Cucumis sativus][more]
BLAST of CsaV3_2G030620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP261.7e-76100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372840 PE=4 SV=1[more]
BLAST of CsaV3_2G030620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G030620CsaV3_2G030620gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G030620.1.exon3CsaV3_2G030620.1.exon3exon
CsaV3_2G030620.1.exon2CsaV3_2G030620.1.exon2exon
CsaV3_2G030620.1.exon1CsaV3_2G030620.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G030620.1.cds3CsaV3_2G030620.1.cds3CDS
CsaV3_2G030620.1.cds2CsaV3_2G030620.1.cds2CDS
CsaV3_2G030620.1.cds1CsaV3_2G030620.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G030620.1CsaV3_2G030620.1-proteinpolypeptide