CsaV3_2G028750.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G028750.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 18856416 .. 18856954 (+)
Sequence length468
RNA-Seq ExpressionCsaV3_2G028750.1
SyntenyCsaV3_2G028750.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACGGGTGGTAGCTGAGGTGAACCAGAAGCCTGCACCAAATTCAAGCAGGAGCAAGGTTTTCCATTATATTAGGACTTGTTTTGCTAGAAGTATAACAAGGTCGTTATTTGTGCTATTTTGGCTATGGCTAGCATCCAGTTGTAACCCATCTACTATGTTTTGTAATGCAGCATGAACTCTAATAAATGCGGCGCCTTGGAGTTGAAATACCAACCTTCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGAATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTGTAGAAATCTCTTTAGGGTTGTTGCTTCTATCTTTTTTTTAGCTTCTCATGAAGGTTTCTCAAGCATGCCGCTTCGCCTAGTGTTATCACATGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCGTATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

mRNA sequence

ATGGGACGGGTGGTAGCTGAGGTGAACCAGAAGCCTGCACCAAATTCAAGCAGGAGCAAGGTTTTCCATTATATTAGGACTTGTTTTGCTAGAAGTATAACAAGCATGAACTCTAATAAATGCGGCGCCTTGGAGTTGAAATACCAACCTTCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGAATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTGTAGAAATCTCTTTAGGGTTGTTGCTTCTATCTTTTTTTTAGCTTCTCATGAAGGTTTCTCAAGCATGCCGCTTCGCCTAGTGTTATCACATGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCGTATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

Coding sequence (CDS)

ATGGGACGGGTGGTAGCTGAGGTGAACCAGAAGCCTGCACCAAATTCAAGCAGGAGCAAGGTTTTCCATTATATTAGGACTTGTTTTGCTAGAAGTATAACAAGCATGAACTCTAATAAATGCGGCGCCTTGGAGTTGAAATACCAACCTTCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGAATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTGTAGAAATCTCTTTAGGGTTGTTGCTTCTATCTTTTTTTTAGCTTCTCATGAAGGTTTCTCAAGCATGCCGCTTCGCCTAGTGTTATCACATGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCGTATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

Protein sequence

MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYLLLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLFQLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL*
Homology
[Close]
BLAST of CsaV3_2G028750.1 vs. NCBI nr
Match: KGN62603.1 (hypothetical protein Csa_022280 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.4e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL 60
           MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL
Sbjct: 1   MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL 60

Query: 61  LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF 120
           LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF
Sbjct: 61  LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF 120

Query: 121 QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL 156
           QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL
Sbjct: 121 QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL 155

[Close]
BLAST of CsaV3_2G028750.1 vs. ExPASy TrEMBL
Match: A0A0A0LLG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361685 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.8e-84
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL 60
           MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL
Sbjct: 1   MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL 60

Query: 61  LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF 120
           LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF
Sbjct: 61  LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF 120

Query: 121 QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL 156
           QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL
Sbjct: 121 QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL 155

The following BLAST results are available for this feature:
BLAST of CsaV3_2G028750.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62603.11.4e-83100.00hypothetical protein Csa_022280 [Cucumis sativus][more]
BLAST of CsaV3_2G028750.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G028750.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLG16.8e-84100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361685 PE=4 SV=1[more]
BLAST of CsaV3_2G028750.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G028750CsaV3_2G028750gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G028750.1.exon1CsaV3_2G028750.1.exon1exon
CsaV3_2G028750.1.exon2CsaV3_2G028750.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G028750.1.cds1CsaV3_2G028750.1.cds1CDS
CsaV3_2G028750.1.cds2CsaV3_2G028750.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G028750.1CsaV3_2G028750.1-proteinpolypeptide