CsaV3_1G043130.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G043130.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 28035371 .. 28035662 (-)
Sequence length204
RNA-Seq ExpressionCsaV3_1G043130.1
SyntenyCsaV3_1G043130.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAGGCAGAGACAAGTTCATTGTGGAGAAGACTTACAAATCGATTGACAACGAAACCAAAAATAGTTTCGAATCTGGGTTTCTGAGAAGAAAGAAGATGGATGGCTTCAGAGTAGGGCTCAAAATTGATCCTTCAATGAAAAAAAGGAGGGCTTTGATGGAAAAGGGTTTCAGAGAAGAAAGGAGACAGAAACGAACGATTTCTTCAAAGGGTTTCGGCGAAGGACGAAGATGGAGGCTCTTTGTTTTTCGAGAATGAAATTAGACAGTGGAAGAGATGGAGATGA

mRNA sequence

ATGGAGGGAGGCAGAGACAAGTTCATTGTGGAGAAGACTTACAAATCGATTGACAACGAAACCAAAAATAGTTTCGAATCTGGGGTTTCAGAGAAGAAAGGAGACAGAAACGAACGATTTCTTCAAAGGGTTTCGGCGAAGGACGAAGATGGAGGCTCTTTGTTTTTCGAGAATGAAATTAGACAGTGGAAGAGATGGAGATGA

Coding sequence (CDS)

ATGGAGGGAGGCAGAGACAAGTTCATTGTGGAGAAGACTTACAAATCGATTGACAACGAAACCAAAAATAGTTTCGAATCTGGGGTTTCAGAGAAGAAAGGAGACAGAAACGAACGATTTCTTCAAAGGGTTTCGGCGAAGGACGAAGATGGAGGCTCTTTGTTTTTCGAGAATGAAATTAGACAGTGGAAGAGATGGAGATGA

Protein sequence

MEGGRDKFIVEKTYKSIDNETKNSFESGVSEKKGDRNERFLQRVSAKDEDGGSLFFENEIRQWKRWR*
Homology
[Close]
BLAST of CsaV3_1G043130.1 vs. NCBI nr
Match: KGN66517.1 (hypothetical protein Csa_007279 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MEGGRDKFIVEKTYKSIDNETKNSFESGVSEKKGDRNERFLQRVSAKDEDGGSLFFENEI 60
          MEGGRDKFIVEKTYKSIDNETKNSFESGVSEKKGDRNERFLQRVSAKDEDGGSLFFENEI
Sbjct: 1  MEGGRDKFIVEKTYKSIDNETKNSFESGVSEKKGDRNERFLQRVSAKDEDGGSLFFENEI 60

Query: 61 RQWKRWR 68
          RQWKRWR
Sbjct: 61 RQWKRWR 67

[Close]
BLAST of CsaV3_1G043130.1 vs. ExPASy TrEMBL
Match: A0A0A0M084 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616350 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MEGGRDKFIVEKTYKSIDNETKNSFESGVSEKKGDRNERFLQRVSAKDEDGGSLFFENEI 60
          MEGGRDKFIVEKTYKSIDNETKNSFESGVSEKKGDRNERFLQRVSAKDEDGGSLFFENEI
Sbjct: 1  MEGGRDKFIVEKTYKSIDNETKNSFESGVSEKKGDRNERFLQRVSAKDEDGGSLFFENEI 60

Query: 61 RQWKRWR 68
          RQWKRWR
Sbjct: 61 RQWKRWR 67

The following BLAST results are available for this feature:
BLAST of CsaV3_1G043130.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66517.13.3e-29100.00hypothetical protein Csa_007279 [Cucumis sativus][more]
BLAST of CsaV3_1G043130.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G043130.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0841.6e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616350 PE=4 SV=1[more]
BLAST of CsaV3_1G043130.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G043130CsaV3_1G043130gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G043130.1.exon2CsaV3_1G043130.1.exon2exon
CsaV3_1G043130.1.exon1CsaV3_1G043130.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G043130.1.cds2CsaV3_1G043130.1.cds2CDS
CsaV3_1G043130.1.cds1CsaV3_1G043130.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G043130.1CsaV3_1G043130.1-proteinpolypeptide