CsaV3_1G027830.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G027830.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 14716974 .. 14717145 (-)
Sequence length172
RNA-Seq ExpressionCsaV3_1G027830.1
SyntenyCsaV3_1G027830.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGACTCTGGTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

mRNA sequence

ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGACTCTGGTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

Coding sequence (CDS)

ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGACTCTGGTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

Protein sequence

MWDPQQSVQMQGGGPTLGFLAFAVAAVVEWPVGLWFLLPPSQGAPYHGASGYRRIPVX
Homology
[Close]
BLAST of CsaV3_1G027830.1 vs. NCBI nr
Match: KAE8653003.1 (hypothetical protein Csa_004561, partial [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MWDPQQSVQMQGGGPTLGFLAFAVAAVVEWPVGLWFLLPPSQGAPYHGASGYRRIPV 58
          MWDPQQSVQMQGGGPTLGFLAFAVAAVVEWPVGLWFLLPPSQGAPYHGASGYRRIPV
Sbjct: 1  MWDPQQSVQMQGGGPTLGFLAFAVAAVVEWPVGLWFLLPPSQGAPYHGASGYRRIPV 57

[Close]
BLAST of CsaV3_1G027830.1 vs. NCBI nr
Match: KAE8650629.1 (hypothetical protein Csa_010360, partial [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 40/60 (66.67%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 1  MWDPQQSVQMQGGGPTLGFLAFAV---AAVVEWPVGLWFLLPPSQGAPYHGASGYRRIPV 58
          MWDPQQSVQMQGGG   G   F       V     G  FLLPPSQGAPYHGASGYRRIPV
Sbjct: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSG--FLLPPSQGAPYHGASGYRRIPV 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G027830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653003.11.1e-25100.00hypothetical protein Csa_004561, partial [Cucumis sativus][more]
KAE8650629.12.9e-1066.67hypothetical protein Csa_010360, partial [Cucumis sativus][more]
BLAST of CsaV3_1G027830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G027830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G027830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G027830CsaV3_1G027830gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G027830.1.exon1CsaV3_1G027830.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G027830.1.cds1CsaV3_1G027830.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G027830.1CsaV3_1G027830.1-proteinpolypeptide