CsaV3_1G025580.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G025580.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribosome assembly factor mrt4
Location	chr1: 14290853 .. 14291352 (-)
Sequence length	201
RNA-Seq Expression	CsaV3_1G025580.1
Synteny	CsaV3_1G025580.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACTTTATCAAAAACAAAGAAGAAAAGGAAGGGACCACAAGAAATCAATGGTGGAATCGATCAGGCAGGGTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGGCAAGTTCTACTTTCTGAATTCTGTATTATTTAATCTGTGTCATCATTTCAAATATTGATTAGTGATACAAATGTACTTTCTCTATGTTGTTTGGTTAGCTTCTAGATAGCACGAGAAAAGATATGAATAATAAATAGCATATTTTTAAAACTCAAAAGATAAAATCATAATGAATAGCATTCCTTAGGAGAAAGGATGAGGACACGTTGTTTCTACAAACCTAATTTTAGTTTTGCCAGTTTGAAATACTTGTGTAGTTTAGTTTAGATATATATTTAAACTAGCACGTTAAATAATAGTTTGCCCTGTTTGTGTTTGCTAAGTTTCAACTA

mRNA sequence

TTACTTTATCAAAAACAAAGAAGAAAAGGAAGGGACCACAAGAAATCAATGGTGGAATCGATCAGGCAGGGTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGGCAAGTTCTACTTTCTGAATTCTGTATTATTTAA

Coding sequence (CDS)

TTACTTTATCAAAAACAAAGAAGAAAAGGAAGGGACCACAAGAAATCAATGGTGGAATCGATCAGGCAGGGTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGGCAAGTTCTACTTTCTGAATTCTGTATTATTTAA

Protein sequence

LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLLSEFCII*

Homology

[Close]

BLAST of CsaV3_1G025580.1 vs. NCBI nr
Match: KAE8652984.1 (hypothetical protein Csa_021111, partial [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLL 60
          LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLL
Sbjct: 1  LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLL 60

Query: 61 SEFCII 67
          SEFCII
Sbjct: 61 SEFCII 66

[Close]

BLAST of CsaV3_1G025580.1 vs. NCBI nr
Match: XP_031743798.1 (NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X1 [Cucumis sativus] >XP_031746043.1 NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 9.7e-26
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1   LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLL 60
           LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKS SRQVLL
Sbjct: 178 LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSASRQVLL 237

Query: 61  SEFCII 67
           SEFCII
Sbjct: 238 SEFCII 243

[Close]

BLAST of CsaV3_1G025580.1 vs. NCBI nr
Match: XP_031743799.1 (NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X2 [Cucumis sativus] >XP_031746044.1 NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X2 [Cucumis sativus] >XP_031746045.1 NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X2 [Cucumis sativus] >XP_031746046.1 NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X2 [Cucumis sativus] >XP_031746047.1 NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X2 [Cucumis sativus] >XP_031746048.1 NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X2 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 9.7e-26
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1   LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLL 60
           LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKS SRQVLL
Sbjct: 177 LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSASRQVLL 236

Query: 61  SEFCII 67
           SEFCII
Sbjct: 237 SEFCII 242

[Close]

BLAST of CsaV3_1G025580.1 vs. NCBI nr
Match: XP_031743803.1 (NAD-dependent malic enzyme 62 kDa isoform, mitochondrial-like isoform X3 [Cucumis sativus] >XP_031746049.1 NAD-dependent malic enzyme 62 kDa isoform, mitochondrial-like isoform X3 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 9.7e-26
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1   LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLL 60
           LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKS SRQVLL
Sbjct: 150 LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSASRQVLL 209

Query: 61  SEFCII 67
           SEFCII
Sbjct: 210 SEFCII 215

[Close]

BLAST of CsaV3_1G025580.1 vs. NCBI nr
Match: XP_031738325.1 (uncharacterized protein LOC116402692 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQV 59
           LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKS SR V
Sbjct: 118 LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSASRVV 175

[Close]

BLAST of CsaV3_1G025580.1 vs. ExPASy TrEMBL
Match: A0A0A0KNA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G453720 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.7e-26
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLL 60
          LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKS SRQVLL
Sbjct: 9  LLYQKQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSASRQVLL 68

Query: 61 SEFCII 67
          SEFCII
Sbjct: 69 SEFCII 74

[Close]

BLAST of CsaV3_1G025580.1 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 5  KQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSR 57
          K ++KGR+HKKSMV+ IRQ VENYNS++VFTVENMRNLKFKELREQLKSTSR
Sbjct: 14 KTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR 65

[Close]

BLAST of CsaV3_1G025580.1 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 5  KQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSR 57
          K ++KGR+HKKSMV+ IRQ VENYNS++VFTVENMRNLKFKELREQLKS+SR
Sbjct: 14 KTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSSSR 65

[Close]

BLAST of CsaV3_1G025580.1 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 5  KQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSR 57
          K ++KGR+HKKSMV+ IRQ VENYNS++VFTVENMRNLKFKELREQLKS+SR
Sbjct: 14 KTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSSSR 65

[Close]

BLAST of CsaV3_1G025580.1 vs. ExPASy TrEMBL
Match: A0A0A0LM77 (Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 17 MVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLLSEF 64
          MVE IRQ VENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLL +F
Sbjct: 1  MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLLPDF 47

[Close]

BLAST of CsaV3_1G025580.1 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-10
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5  KQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSTSR 57
          K ++KGR+HK+ +V  IR+ VE Y+SV+VF+ ENMRN+KFKE R+Q +   +
Sbjct: 14 KTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGK 65

The following BLAST results are available for this feature:

BLAST of CsaV3_1G025580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652984.1	2.6e-26	100.00	hypothetical protein Csa_021111, partial [Cucumis sativus]	[more]
XP_031743798.1	9.7e-26	98.48	NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X1 [Cucumi...	[more]
XP_031743799.1	9.7e-26	98.48	NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X2 [Cucumi...	[more]
XP_031743803.1	9.7e-26	98.48	NAD-dependent malic enzyme 62 kDa isoform, mitochondrial-like isoform X3 [Cucumi...	[more]
XP_031738325.1	2.7e-20	96.55	uncharacterized protein LOC116402692 [Cucumis sativus]	[more]

BLAST of CsaV3_1G025580.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G025580.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNA7	4.7e-26	98.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G453720 PE=3 SV=1	[more]
A0A6J1DT71	1.4e-14	82.69	Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=...	[more]
A0A6J1I1E2	4.1e-14	80.77	Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S...	[more]
A0A6J1F4Z2	4.1e-14	80.77	Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3...	[more]
A0A0A0LM77	2.7e-13	91.49	Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV...	[more]

BLAST of CsaV3_1G025580.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25260.1	2.1e-10	51.92	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 9..61 e-value: 5.0E-9 score: 37.9
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 11..54
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 10..55 e-value: 3.2E-9 score: 36.8
None	No IPR available	PANTHER	PTHR45841:SF1	MRNA TURNOVER PROTEIN 4 HOMOLOG	coord: 4..59
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 4..59

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G025580	CsaV3_1G025580	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G025580.1.exon1	CsaV3_1G025580.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G025580.1.cds1	CsaV3_1G025580.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G025580.1	CsaV3_1G025580.1-protein	polypeptide