CsaV3_1G014800.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014800.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 10451223 .. 10451396 (-)
Sequence length174
RNA-Seq ExpressionCsaV3_1G014800.1
SyntenyCsaV3_1G014800.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCAGAAATCAGTTGCTGGCAGCGATTGCAGCTCCGAATTCAGCTGCTTGACCTCTGGCTTAGAAGCTTGTCTCCAAATTCAAATTTAAACCAGCCTTGTTTCTCGTTTTTCGACGCTTGCCTCTCACCAAATCAGAGGCTACGAAAATTAGAATCACAAAAACGGACA

mRNA sequence

ATGAAATCAGAAATCAGTTGCTGGCAGCGATTGCAGCTCCGAATTCAGCTGCTTGACCTCTGGCTTAGAAGCTTGTCTCCAAATTCAAATTTAAACCAGCCTTGTTTCTCGTTTTTCGACGCTTGCCTCTCACCAAATCAGAGGCTACGAAAATTAGAATCACAAAAACGGACA

Coding sequence (CDS)

ATGAAATCAGAAATCAGTTGCTGGCAGCGATTGCAGCTCCGAATTCAGCTGCTTGACCTCTGGCTTAGAAGCTTGTCTCCAAATTCAAATTTAAACCAGCCTTGTTTCTCGTTTTTCGACGCTTGCCTCTCACCAAATCAGAGGCTACGAAAATTAGAATCACAAAAACGGACA

Protein sequence

MKSEISCWQRLQLRIQLLDLWLRSLSPNSNLNQPCFSFFDACLSPNQRLRKLESQKRT
Homology
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BLAST of CsaV3_1G014800.1 vs. NCBI nr
Match: KAE8652806.1 (hypothetical protein Csa_022754, partial [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 1.6e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MKSEISCWQRLQLRIQLLDLWLRSLSPNSNLNQPCFSFFDACLSPNQRLRKLESQKRT 59
          MKSEISCWQRLQLRIQLLDLWLRSLSPNSNLNQPCFSFFDACLSPNQRLRKLESQKRT
Sbjct: 1  MKSEISCWQRLQLRIQLLDLWLRSLSPNSNLNQPCFSFFDACLSPNQRLRKLESQKRT 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652806.11.6e-24100.00hypothetical protein Csa_022754, partial [Cucumis sativus][more]
BLAST of CsaV3_1G014800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G014800CsaV3_1G014800gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G014800.1.exon1CsaV3_1G014800.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G014800.1.cds1CsaV3_1G014800.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G014800.1CsaV3_1G014800.1-proteinpolypeptide