CsaV3_1G013500.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013500.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 8791040 .. 8791330 (+)
Sequence length291
RNA-Seq ExpressionCsaV3_1G013500.1
SyntenyCsaV3_1G013500.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCACTATGAAGATGGAGGTATATAATAATTTTCATTCCTCCATTTTTGTTTCGGTGGAGGTCTCGGAGATCCGGTGCTCTCGCGCTCGCATACCGGAACCGGACGTCAATCCCTTCTCACCATTTTTCGAGGGCCAGGGTTCTTCTTTCCCATCTCTCGTTCGGGTCCTCCTCCCGGTGCTTGTAGCCTTCTTCCCAATCCCAATCACTCCTTTTCATTTCTATGTATTTTGTTCTTTAACCGGATTTTTGGGATTTCCTTCTCCTCCTCCTACCTCCTGCTAA

mRNA sequence

ATGGAGGCCACTATGAAGATGGAGGTATATAATAATTTTCATTCCTCCATTTTTGTTTCGGTGGAGGTCTCGGAGATCCGGTGCTCTCGCGCTCGCATACCGGAACCGGACGTCAATCCCTTCTCACCATTTTTCGAGGGCCAGGGTTCTTCTTTCCCATCTCTCGTTCGGGTCCTCCTCCCGGTGCTTGTAGCCTTCTTCCCAATCCCAATCACTCCTTTTCATTTCTATGTATTTTGTTCTTTAACCGGATTTTTGGGATTTCCTTCTCCTCCTCCTACCTCCTGCTAA

Coding sequence (CDS)

ATGGAGGCCACTATGAAGATGGAGGTATATAATAATTTTCATTCCTCCATTTTTGTTTCGGTGGAGGTCTCGGAGATCCGGTGCTCTCGCGCTCGCATACCGGAACCGGACGTCAATCCCTTCTCACCATTTTTCGAGGGCCAGGGTTCTTCTTTCCCATCTCTCGTTCGGGTCCTCCTCCCGGTGCTTGTAGCCTTCTTCCCAATCCCAATCACTCCTTTTCATTTCTATGTATTTTGTTCTTTAACCGGATTTTTGGGATTTCCTTCTCCTCCTCCTACCTCCTGCTAA

Protein sequence

MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLLPVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC*
Homology
[Close]
BLAST of CsaV3_1G013500.1 vs. NCBI nr
Match: KGN64804.1 (hypothetical protein Csa_013690 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 7.7e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL 60
          MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL
Sbjct: 1  MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL 60

Query: 61 PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC 97
          PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC
Sbjct: 61 PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC 96

[Close]
BLAST of CsaV3_1G013500.1 vs. ExPASy TrEMBL
Match: A0A0A0LUY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G108290 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.7e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL 60
          MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL
Sbjct: 1  MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL 60

Query: 61 PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC 97
          PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC
Sbjct: 61 PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC 96

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64804.17.7e-48100.00hypothetical protein Csa_013690 [Cucumis sativus][more]
BLAST of CsaV3_1G013500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013500.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUY93.7e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G108290 PE=4 SV=1[more]
BLAST of CsaV3_1G013500.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G013500CsaV3_1G013500gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G013500.1.exon1CsaV3_1G013500.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G013500.1.cds1CsaV3_1G013500.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G013500.1CsaV3_1G013500.1-proteinpolypeptide