CsaV3_1G003040.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003040.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 1896977 .. 1899183 (-)
Sequence length234
RNA-Seq ExpressionCsaV3_1G003040.1
SyntenyCsaV3_1G003040.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGTATAGGATCCAGGTAGATTGTAAAGCATCAGTAGTTAGGAGCAACTTTTTTTTTTTATATTTATTCCATCTGATTCATTTATTAATCTAATGTGATAGTGCTAACATATTTTGTAACGTTTAGGGTGAACAAAAGACGAGCTTAGTTGGGATTAAACGATGGTATATATTTTAAATATGTGGTCATACATTGATATATATATATCACTTAAGTTATACTTAATAAATTCACAATTAAATGGGAAGATAGGTGGCATACCGAATTTAAATGTACACTCCATTTAATCGTTGCAGTGGACGCAGACAGATACAACATCAGACGTTGTATAATTTCTTCTTTACATTCAATGATCTAACATTATTTGGCACACATCCACAGTATGTATTCTCACAATGAAATGTTCAACGTCAATATTATTTATAAAGTTACATGAACCATACAAAATAGCATATACCAATCTCATTAGGAATACACACTTAGTCAGAAGACAGAGTTAAATTTTCTAATTTTAAATATTTTTGTAAAGTTTTTCATATTCTTTTACTTATTCAACTATCTATCAAAATCAACATTGATTCTATGGTTATATCAAAATTGAATCTCATATCATTCTATCAATATTCTAATCGTCGTAGACTTTAAAATATAAACCTATTTTTGAAGGTTAAGGTAGAAATGACACACAAAGCCTGAAACAAAAGAGAACAACACTTGTTTGGTGATACGAATAGTATAACCTTAATGAGAATTTAACAAAACCAAACCGGATTATCTTTATCCAAGAATAAACGCTTCGAATTCGGTAAATACCAAAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGGTTTCTTTTTCATCTCTAGTCTCCGTTTTTCCTGATTTTTTTTTTTGCTTCAATTGTCGCATTGATTATTTGCTGTTTTTTTCTTTTGTGTTCTCGGCTTCTTCTTCCTGTTCTTAATGTTTCTTCTCGTCTTTACGGTTGGGAATGAAGTGTAAAATTAGAGGCTGAGCTACACAACATATGGTGGAGCAGAGACATGGTTGTTTAAGAATTCGGTTGTCTTGATATTGGAGGAAAGAGATTCCTTTTAGTTTGTTTAGTCTTCTGTTGGGTCTGGAAAACAGTTGATAATACTGTGAATAGGGGATATGCACAAGGGCATTGAGTCATTAGGAGTTCAGAACATAAATTCATAATATCTGGTGCACTTCGGTGTACCTTATCCTTTAGGGACCTACTTTGAATTTTACAGATGCCTCGAGTGCATTATATTTTTATTGTTTGCATGTCAGTGTACCTATACGTGACTTTAGGATTTTTATTTTGCTAACAATAAGTTCCATTTTAGATGTTCGATTATGTAATGGAAAAATTGGAAAGGGTTGTTTTAACTTACTTTTTTTTTAATCTTTTGTTGTCTTAGATTGTAATGTTATTTCACCGTATATTAGTAATTTGAGAAGTTCCATTTTTCTTTAGGAAAATTTATTTGTTCTATGTTTACCTCTGTTCCCGATTGAAATTATATATGGGCTGATGGGAGTTATCTGTTGGTTTGTTGTGATTAGACTCGGGCAGGGAAAACTTATTTTTGGTATTTGGGAAATGTTTTTACACTAATGGAATGGTTTGCTTTTTATTACAAATGTAATTCTTTTGGTGTTTAGGGTTCTCCCCTGTTTACAATTATTAATGAAACGTTTATTTTATCAAAAAAAAGAAGAAGATATAATTCATTCATAATATGAAATTAATTGGCTTGGAGCCGCACAAACCCAAAGGAGATGAAAGATGACTATCATGCCCATTAAATTTTGAGAGCTTATAACTATTGGATCCATTTTTATATACAATATACTTTTGACCATGTATCACATGTTTTGAAATCTCTCTTGTTTTCATTGATATAGAATTATTTCAATTTTCAATTGAAAAACTGGTGGAATTATGTCTCATGGAGTTCATTTGGTGTCTTTCCATATGTTTTTTTTTTTCTGCTGCCATTGAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

mRNA sequence

GGGTATAGGATCCAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

Coding sequence (CDS)

GGGTATAGGATCCAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

Protein sequence

GYRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHFQFLKFTTKSKDGILE*
Homology
[Close]
BLAST of CsaV3_1G003040.1 vs. NCBI nr
Match: KAE8652438.1 (hypothetical protein Csa_023787, partial [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 8.1e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  GYRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLD 60
          GYRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLD
Sbjct: 1  GYRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLD 60

Query: 61 HFQFLKFTTKSKDGILE 78
          HFQFLKFTTKSKDGILE
Sbjct: 61 HFQFLKFTTKSKDGILE 77

[Close]
BLAST of CsaV3_1G003040.1 vs. ExPASy TrEMBL
Match: A0A0A0LPK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014350 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.7e-31
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 3  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 62
          RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF
Sbjct: 4  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 63

Query: 63 QFLKFTTKSKDGILE 78
          QFLKFTTKSKDGILE
Sbjct: 64 QFLKFTTKSKDGILE 78

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652438.18.1e-32100.00hypothetical protein Csa_023787, partial [Cucumis sativus][more]
BLAST of CsaV3_1G003040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003040.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPK09.7e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014350 PE=4 SV=1[more]
BLAST of CsaV3_1G003040.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G003040CsaV3_1G003040gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G003040.1.exon3CsaV3_1G003040.1.exon3exon
CsaV3_1G003040.1.exon2CsaV3_1G003040.1.exon2exon
CsaV3_1G003040.1.exon1CsaV3_1G003040.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G003040.1.cds3CsaV3_1G003040.1.cds3CDS
CsaV3_1G003040.1.cds2CsaV3_1G003040.1.cds2CDS
CsaV3_1G003040.1.cds1CsaV3_1G003040.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G003040.1CsaV3_1G003040.1-proteinpolypeptide