CsGy7G020620.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G020620.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	zinc finger CCCH domain-containing protein 62-like
Location	Gy14Chr7: 22935237 .. 22936243 (+)
Sequence length	315
RNA-Seq Expression	CsGy7G020620.2
Synteny	CsGy7G020620.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTTCTGGGAATCTTGGAACCGATCCTTCTCTCTTTGATCTAGAAGAAATTATCGATAACAATGGAGGATCCGACGACGACTATGATTCTGATGATTTAGAATGTGATCCAAGTTACAGCATTCAGAAAAGAACCAATTCGAAGACTTCAAGGACCTCGATCAGGAAGAAATTAAAGCCATTGTAAGTATTTGAATCTATTTAACTCATTTCTCATCTTGTTCGGTGTGTTCAACTATTATACTTGATTAATCGATATAGAGCTGGAACTCATTAGGTTTTTTTTTTTTTTTTTTTTCCATTTTGCAGGGATATTGTGGATACGAACCTGATTGAGGATTCAGATATAGATGATGTAGTGCCAAATATTCCGATTATAAATGAAAAAGATGAGAAAGATACTCGTGAAGTGCTATCAATCATTAAAGGTTAGTCAAATTTTTTGAATGGTTTCTTCCTATGAACAGAGAAGGTCATTAGTAATCTGAACTCTATAAGTTTTTTTCTCCTCTTTTTCCATTTCTTGTAAACAATCGATGTGCTCATAGCCTTAGGTACTGCTGAAGTATTATGATTTTGTGTTAAGTTTAGGAATAAAAGATTATTTGACGTACGGATTTCTATTCCCCTATGAATGTATTTGTTAGTTGTGAAGAGTAAAAACTCTAAAAAGATGTTCCCCTTTTGTGTAAATGAACTCAGAAACGATAGTTTCGACATTTTTTGGCTCCTCTTCTTTCTGGATAACCCATTTCTCTCTCATTCTTTGGACCTAGCTGGTGGTAAGCTTGAGAAACTCAAGGTAGAACAATGTAAATCTTATCTAAGAAATAATGGGTTGAGGCTGAGCGGAACAAAAGATGTGCTCATTCAGCGCATCAAGGAGCATTTAGAGTAAGTTTGTGTTGTATGTATGGTTGTTTTAGAATGGTTTTGAAAGGAGTTTATTGCTAACGACACATTTCTTTTCTCTCTCATTTTTAATTGTTTACAGGATTTTAA

mRNA sequence

ATGGCATTTTCTGGGAATCTTGGAACCGATCCTTCTCTCTTTGATCTAGAAGAAATTATCGATAACAATGGAGGATCCGACGACGACTATGATTCTGATGATTTAGAATGTGATCCAAGTTACAGCATTCAGAAAAGAACCAATTCGAAGACTTCAAGGACCTCGATCAGGAAGAAATTAAAGCCATTGGATATTGTGGATACGAACCTGATTGAGGATTCAGATATAGATGATGTAGTGCCAAATATTCCGATTATAAATGAAAAAGATGAGAAAGATACTCGTGAAGTGCTATCAATCATTAAAGGATTTTAA

Coding sequence (CDS)

ATGGCATTTTCTGGGAATCTTGGAACCGATCCTTCTCTCTTTGATCTAGAAGAAATTATCGATAACAATGGAGGATCCGACGACGACTATGATTCTGATGATTTAGAATGTGATCCAAGTTACAGCATTCAGAAAAGAACCAATTCGAAGACTTCAAGGACCTCGATCAGGAAGAAATTAAAGCCATTGGATATTGTGGATACGAACCTGATTGAGGATTCAGATATAGATGATGTAGTGCCAAATATTCCGATTATAAATGAAAAAGATGAGAAAGATACTCGTGAAGTGCTATCAATCATTAAAGGATTTTAA

Protein sequence

MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKLKPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKGF*

Homology

[Close]

BLAST of CsGy7G020620.2 vs. NCBI nr
Match: XP_031744267.1 (zinc finger CCCH domain-containing protein 62 isoform X2 [Cucumis sativus])

HSP 1 Score: 201 bits (512), Expect = 3.46e-60
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL
Sbjct: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG
Sbjct: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103

[Close]

BLAST of CsGy7G020620.2 vs. NCBI nr
Match: XP_004141817.1 (zinc finger CCCH domain-containing protein 62 isoform X1 [Cucumis sativus] >KGN45466.1 hypothetical protein Csa_016559 [Cucumis sativus])

HSP 1 Score: 199 bits (506), Expect = 2.75e-59
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL
Sbjct: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIK 
Sbjct: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKA 103

[Close]

BLAST of CsGy7G020620.2 vs. NCBI nr
Match: XP_008462271.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like [Cucumis melo] >KAA0059379.1 zinc finger CCCH domain-containing protein 62-like [Cucumis melo var. makuwa] >TYK03947.1 zinc finger CCCH domain-containing protein 62-like [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (397), Expect = 3.10e-43
Identity = 83/103 (80.58%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAF  NL TDPS FDLEE+ID+NG SDD+Y SDD ECDPSYSIQKRTNSKTSRTSIRKK 
Sbjct: 1   MAFPRNLETDPSRFDLEELIDDNGESDDEYYSDDSECDPSYSIQKRTNSKTSRTSIRKKS 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KPLD +D NL  DSDIDD VPNIPI+NEKDEKDT EVLSIIK 
Sbjct: 61  KPLDALDMNLTGDSDIDDDVPNIPILNEKDEKDTLEVLSIIKA 103

[Close]

BLAST of CsGy7G020620.2 vs. NCBI nr
Match: XP_038899462.1 (zinc finger CCCH domain-containing protein 62-like [Benincasa hispida])

HSP 1 Score: 146 bits (369), Expect = 3.50e-39
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAFS NL T+PS FDLEE+ID+N  SDD+Y S D ECDPSY I+K+TNSK SRTSIRKK 
Sbjct: 1   MAFSDNLETNPSRFDLEELIDDNCDSDDEYHSHDSECDPSYRIEKKTNSKVSRTSIRKKS 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIK 102
           KPL+IVD NLI D DIDDV PN+PI+NE DEKD REVLSI+K
Sbjct: 61  KPLEIVDMNLIVDMDIDDVAPNVPILNENDEKDIREVLSIVK 102

[Close]

BLAST of CsGy7G020620.2 vs. NCBI nr
Match: XP_022145492.1 (zinc finger CCCH domain-containing protein 62-like [Momordica charantia])

HSP 1 Score: 127 bits (319), Expect = 4.79e-32
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAFSG     P   +LEEIID++G SDD+YDSDD ECDPSYSI++++NSK SRTSIRKK 
Sbjct: 1   MAFSGRFEPTPRRSELEEIIDDDGESDDEYDSDDSECDPSYSIEEKSNSKISRTSIRKKS 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KPL+ VD  LI ++D+DD  PN+ I+NE DEKD  EVL IIK 
Sbjct: 61  KPLNDVDMELIAEADMDDAAPNVTILNENDEKDIHEVLQIIKA 103

[Close]

BLAST of CsGy7G020620.2 vs. ExPASy TrEMBL
Match: A0A0A0KCF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448770 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 1.33e-59
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL
Sbjct: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIK 
Sbjct: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKA 103

[Close]

BLAST of CsGy7G020620.2 vs. ExPASy TrEMBL
Match: A0A5A7V0Q9 (Zinc finger CCCH domain-containing protein 62-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001440 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 1.50e-43
Identity = 83/103 (80.58%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAF  NL TDPS FDLEE+ID+NG SDD+Y SDD ECDPSYSIQKRTNSKTSRTSIRKK 
Sbjct: 1   MAFPRNLETDPSRFDLEELIDDNGESDDEYYSDDSECDPSYSIQKRTNSKTSRTSIRKKS 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KPLD +D NL  DSDIDD VPNIPI+NEKDEKDT EVLSIIK 
Sbjct: 61  KPLDALDMNLTGDSDIDDDVPNIPILNEKDEKDTLEVLSIIKA 103

[Close]

BLAST of CsGy7G020620.2 vs. ExPASy TrEMBL
Match: A0A1S3CH36 (zinc finger CCCH domain-containing protein 62-like OS=Cucumis melo OX=3656 GN=LOC103500669 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 1.50e-43
Identity = 83/103 (80.58%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAF  NL TDPS FDLEE+ID+NG SDD+Y SDD ECDPSYSIQKRTNSKTSRTSIRKK 
Sbjct: 1   MAFPRNLETDPSRFDLEELIDDNGESDDEYYSDDSECDPSYSIQKRTNSKTSRTSIRKKS 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KPLD +D NL  DSDIDD VPNIPI+NEKDEKDT EVLSIIK 
Sbjct: 61  KPLDALDMNLTGDSDIDDDVPNIPILNEKDEKDTLEVLSIIKA 103

[Close]

BLAST of CsGy7G020620.2 vs. ExPASy TrEMBL
Match: A0A6J1CWR5 (zinc finger CCCH domain-containing protein 62-like OS=Momordica charantia OX=3673 GN=LOC111014927 PE=4 SV=1)

HSP 1 Score: 127 bits (319), Expect = 2.32e-32
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAFSG     P   +LEEIID++G SDD+YDSDD ECDPSYSI++++NSK SRTSIRKK 
Sbjct: 1   MAFSGRFEPTPRRSELEEIIDDDGESDDEYDSDDSECDPSYSIEEKSNSKISRTSIRKKS 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KPL+ VD  LI ++D+DD  PN+ I+NE DEKD  EVL IIK 
Sbjct: 61  KPLNDVDMELIAEADMDDAAPNVTILNENDEKDIHEVLQIIKA 103

[Close]

BLAST of CsGy7G020620.2 vs. ExPASy TrEMBL
Match: A0A6J1GQF0 (zinc finger CCCH domain-containing protein 62-like OS=Cucurbita moschata OX=3662 GN=LOC111456567 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 3.34e-30
Identity = 64/103 (62.14%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MAFSGNLGTDPSLFDLEEIIDNNGGSDDDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKL 60
           MAFSGN  TDP  F+LEE+ID++G SDD  DSDD ECDPSYS ++ TNSK SR SIRKK 
Sbjct: 1   MAFSGNFVTDPRRFELEELIDDHGESDDQCDSDDSECDPSYSFEEDTNSKVSRISIRKKS 60

Query: 61  KPLDIVDTNLIEDSDIDDVVPNIPIINEKDEKDTREVLSIIKG 103
           KP ++ D  LI  + +DDVVP +  +NE DEKD  EVLSIIK 
Sbjct: 61  KPSEVEDRELIAQAYLDDVVPEVLNLNENDEKDISEVLSIIKA 103

The following BLAST results are available for this feature:

BLAST of CsGy7G020620.2 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G020620.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744267.1	3.46e-60	100.00	zinc finger CCCH domain-containing protein 62 isoform X2 [Cucumis sativus]	[more]
XP_004141817.1	2.75e-59	99.03	zinc finger CCCH domain-containing protein 62 isoform X1 [Cucumis sativus] >KGN4...	[more]
XP_008462271.1	3.10e-43	80.58	PREDICTED: zinc finger CCCH domain-containing protein 62-like [Cucumis melo] >KA...	[more]
XP_038899462.1	3.50e-39	73.53	zinc finger CCCH domain-containing protein 62-like [Benincasa hispida]	[more]
XP_022145492.1	4.79e-32	63.11	zinc finger CCCH domain-containing protein 62-like [Momordica charantia]	[more]

BLAST of CsGy7G020620.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCF3	1.33e-59	99.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448770 PE=4 SV=1	[more]
A0A5A7V0Q9	1.50e-43	80.58	Zinc finger CCCH domain-containing protein 62-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CH36	1.50e-43	80.58	zinc finger CCCH domain-containing protein 62-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1CWR5	2.32e-32	63.11	zinc finger CCCH domain-containing protein 62-like OS=Momordica charantia OX=367...	[more]
A0A6J1GQF0	3.34e-30	62.14	zinc finger CCCH domain-containing protein 62-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of CsGy7G020620.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	PANTHER	PTHR35323	SAP DOMAIN-CONTAINING PROTEIN	coord: 8..102
None	No IPR available	PANTHER	PTHR35323:SF4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE	coord: 8..102

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G020620	CsGy7G020620	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G020620.2.exon1	CsGy7G020620.2.exon1	exon
CsGy7G020620.2.exon2	CsGy7G020620.2.exon2	exon
CsGy7G020620.2.exon3	CsGy7G020620.2.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy7G020620.2	cds.CsGy7G020620.2	CDS
cds.CsGy7G020620.2	cds.CsGy7G020620.2_2	CDS
cds.CsGy7G020620.2	cds.CsGy7G020620.2_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G020620.2	CsGy7G020620.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding