CsGy6G024835.1 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy6G024835.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionLysM domain-containing protein
LocationGy14Chr6: 24600026 .. 24600337 (-)
Sequence length312
RNA-Seq ExpressionCsGy6G024835.1
SyntenyCsGy6G024835.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG

mRNA sequence

ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG

Coding sequence (CDS)

ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG

Protein sequence

MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP*
Homology
BLAST of CsGy6G024835.1 vs. NCBI nr
Match: KAE8647420.1 (hypothetical protein Csa_003059 [Cucumis sativus])

HSP 1 Score: 207 bits (528), Expect = 1.66e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISE 60
           MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISE
Sbjct: 1   MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISE 60

Query: 61  KCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP 103
           KCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP
Sbjct: 61  KCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP 103

BLAST of CsGy6G024835.1 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111 bits (277), Expect = 2.31e-29
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 1  MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISE 60
          M KRSSS       + + + LV+++    +WCC S E+L   C+EIYVV EGETLQSISE
Sbjct: 1  MAKRSSS-------RREFLVLVLVLSWWCVWCCNSQEVL-MGCDEIYVVREGETLQSISE 60

Query: 61 KCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFF 95
          KCGDPFI E NPHIND DDVFPGLVIKITPF H F
Sbjct: 61 KCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRF 87

BLAST of CsGy6G024835.1 vs. NCBI nr
Match: XP_022744694.1 (uncharacterized protein LOC111295462 [Durio zibethinus])

HSP 1 Score: 104 bits (259), Expect = 1.79e-26
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSELLHYN-------------CEEIYVVHEGETLQSISEKCGDPFIV 81
           V+L+LSC   CC+ S    Y              C+EIYVV EGETLQ+ISEKCGDPFIV
Sbjct: 24  VMLILSC---CCEESSGKDYRGKEVLVLQQKNKPCDEIYVVREGETLQTISEKCGDPFIV 83

Query: 82  EENPHINDPDDVFPGLVIKITPFHH 93
           EENPHI+DPDDVFPGLVIKITPF++
Sbjct: 84  EENPHIHDPDDVFPGLVIKITPFNN 105

BLAST of CsGy6G024835.1 vs. NCBI nr
Match: XP_019179717.1 (PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil])

HSP 1 Score: 103 bits (258), Expect = 2.26e-26
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 42 NCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 91
           CEEIYVV EGETLQ+ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
Sbjct: 50 RCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 99

BLAST of CsGy6G024835.1 vs. NCBI nr
Match: XP_010271716.1 (PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera])

HSP 1 Score: 103 bits (258), Expect = 2.68e-26
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSE---LLHYN-------CEEIYVVHEGETLQSISEKCGDPFIVEEN 81
           ++LV+  L+ CC SSE   L+  N       C+EIYVV EGETL +ISEKCGDPFIVEEN
Sbjct: 24  LVLVVLLLLGCCDSSESESLVRMNLRMISKPCDEIYVVEEGETLHTISEKCGDPFIVEEN 83

Query: 82  PHINDPDDVFPGLVIKITPF 91
           PHI+DPDDVFPGLVIKITPF
Sbjct: 84  PHIHDPDDVFPGLVIKITPF 103

BLAST of CsGy6G024835.1 vs. ExPASy TrEMBL
Match: A0A6P5YVX7 (uncharacterized protein LOC111295462 OS=Durio zibethinus OX=66656 GN=LOC111295462 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 8.65e-27
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSELLHYN-------------CEEIYVVHEGETLQSISEKCGDPFIV 81
           V+L+LSC   CC+ S    Y              C+EIYVV EGETLQ+ISEKCGDPFIV
Sbjct: 24  VMLILSC---CCEESSGKDYRGKEVLVLQQKNKPCDEIYVVREGETLQTISEKCGDPFIV 83

Query: 82  EENPHINDPDDVFPGLVIKITPFHH 93
           EENPHI+DPDDVFPGLVIKITPF++
Sbjct: 84  EENPHIHDPDDVFPGLVIKITPFNN 105

BLAST of CsGy6G024835.1 vs. ExPASy TrEMBL
Match: A0A1U8AYB4 (uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.30e-26
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSE---LLHYN-------CEEIYVVHEGETLQSISEKCGDPFIVEEN 81
           ++LV+  L+ CC SSE   L+  N       C+EIYVV EGETL +ISEKCGDPFIVEEN
Sbjct: 24  LVLVVLLLLGCCDSSESESLVRMNLRMISKPCDEIYVVEEGETLHTISEKCGDPFIVEEN 83

Query: 82  PHINDPDDVFPGLVIKITPF 91
           PHI+DPDDVFPGLVIKITPF
Sbjct: 84  PHIHDPDDVFPGLVIKITPF 103

BLAST of CsGy6G024835.1 vs. ExPASy TrEMBL
Match: M5WDM2 (LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G113800 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 2.62e-26
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 0

Query: 39  LHYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 91
           L+  C+EIYVVHEGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPF
Sbjct: 53  LNMPCDEIYVVHEGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKITPF 105

BLAST of CsGy6G024835.1 vs. ExPASy TrEMBL
Match: A0A6J5Y0Z0 (LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS44437 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 2.62e-26
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 0

Query: 39  LHYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 91
           L+  C+EIYVVHEGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPF
Sbjct: 53  LNMPCDEIYVVHEGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKITPF 105

BLAST of CsGy6G024835.1 vs. ExPASy TrEMBL
Match: A0A2G2VUW0 (LysM domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_24433 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 3.31e-26
Identity = 56/82 (68.29%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSELLH----------YN--CEEIYVVHEGETLQSISEKCGDPFIVE 81
           ++LVLSC    C+SSE  H          YN  C+EIYVV EGETL +ISEKCGDPFIVE
Sbjct: 24  IMLVLSC----CESSENDHQFIVQMQGNNYNKACDEIYVVKEGETLHTISEKCGDPFIVE 83

Query: 82  ENPHINDPDDVFPGLVIKITPF 91
           ENPHI+DPDDVFPGLVIKITPF
Sbjct: 84  ENPHIHDPDDVFPGLVIKITPF 101

BLAST of CsGy6G024835.1 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 2  GKRSSSSSSSSLSKAKVVSLVILVLSC----LIWCCKSSELLHYNCEEIYVVHEGETLQS 61
          G R+ SS  S+   A V+  +IL+LS          + S+     CEEIY+V EGETL +
Sbjct: 3  GSRTGSSDMSAWCSAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHT 62

Query: 62 ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH 93
          I +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Sbjct: 63 IGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPFY 97

BLAST of CsGy6G024835.1 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 87.0 bits (214), Expect = 9.5e-18
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 4   RSSSSSSSSLSKAKVVSLVILVL-------------------SCLIWCCKSSELLHYNCE 63
           R + S S++++   +V+L+IL L                   +C +W  +  +++   CE
Sbjct: 3   RVTVSRSNTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVW--RGKQMMERPCE 62

Query: 64  EIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI 89
           E+YVV EG+TL SISEKCGDPFIVE NPHI+DPDDVFPGL+IK+
Sbjct: 63  ELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

BLAST of CsGy6G024835.1 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-17
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 43  CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP 91
           C+EIY V EGETLQ+ISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8647420.11.66e-67100.00hypothetical protein Csa_003059 [Cucumis sativus][more]
KAG6595189.12.31e-2963.16hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022744694.11.79e-2663.53uncharacterized protein LOC111295462 [Durio zibethinus][more]
XP_019179717.12.26e-2694.00PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil][more]
XP_010271716.12.68e-2667.50PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
A0A6P5YVX78.65e-2763.53uncharacterized protein LOC111295462 OS=Durio zibethinus OX=66656 GN=LOC11129546... [more]
A0A1U8AYB41.30e-2667.50uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716... [more]
M5WDM22.62e-2686.79LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G113800 PE=4 ... [more]
A0A6J5Y0Z02.62e-2686.79LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS44... [more]
A0A2G2VUW03.31e-2668.29LysM domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_24433 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G62150.12.3e-1953.68peptidoglycan-binding LysM domain-containing protein [more]
AT4G25433.19.5e-1846.15peptidoglycan-binding LysM domain-containing protein [more]
AT3G52790.14.7e-1777.08peptidoglycan-binding LysM domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 38..93
e-value: 9.9E-9
score: 36.6
IPR018392LysM domainPFAMPF01476LysMcoord: 47..89
e-value: 3.1E-5
score: 23.9
IPR018392LysM domainCDDcd00118LysMcoord: 46..88
e-value: 1.64475E-6
score: 39.7761
NoneNo IPR availablePANTHERPTHR33648:SF15EMBRYO SAC 1coord: 14..92
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 14..92
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 6.0

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G024835CsGy6G024835gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G024835.1.exon1CsGy6G024835.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy6G024835.1cds.CsGy6G024835.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G024835.1CsGy6G024835.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane