CsGy6G015530.1 (mRNA) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATTGATGTTGAAGATGACAATTACTTCATGGTAGCCCTTTTTTTTGCTCTCGTTTTACTTCTTGTTGATGGGTTTCCAGAATTGGTTATGGCTATTCAAAGAGTTGAAGTTTTCTATAAACAAAAACAATTCTATTTCTACCCGGCTTGGGCCTATGCTATGCTATTACAGCTTGATCAAGATTCCTCTTTCCCTCGTCGAATCCTTAGTTTGGACTTCTCTTACTTACTACGTCATTGGCTTCACCCCTCAACCTATCAGGTTAGTTTTCATGAACTCTTTAGTTTTGTAACCATTCTCAAAATGCCATAATTTGGATTAAACGCTTAGAACTTCTTTTCTTTTTTCTTTTTTAATTTTTGGTTATAAGTTCTAATTTATTATTCTGTTTGGGGTGCATTTATCAGCATTGTCCCTGTTTAGAATGA ATGGAAATTGATGTTGAAGATGACAATTACTTCATGGTAGCCCTTTTTTTTGCTCTCGTTTTACTTCTTGTTGATGGGTTTCCAGAATTGGTTATGGCTATTCAAAGAGTTGAAGTTTTCTATAAACAAAAACAATTCTATTTCTACCCGGCTTGGGCCTATGCTATGCTATTACAGCTTGATCAAGATTCCTCTTTCCCTCGTCGAATCCTTAGTTTGGACTTCTCTTACTTACTACGTCATTGGCTTCACCCCTCAACCTATCAGCATTGTCCCTGTTTAGAATGA ATGGAAATTGATGTTGAAGATGACAATTACTTCATGGTAGCCCTTTTTTTTGCTCTCGTTTTACTTCTTGTTGATGGGTTTCCAGAATTGGTTATGGCTATTCAAAGAGTTGAAGTTTTCTATAAACAAAAACAATTCTATTTCTACCCGGCTTGGGCCTATGCTATGCTATTACAGCTTGATCAAGATTCCTCTTTCCCTCGTCGAATCCTTAGTTTGGACTTCTCTTACTTACTACGTCATTGGCTTCACCCCTCAACCTATCAGCATTGTCCCTGTTTAGAATGA MEIDVEDDNYFMVALFFALVLLLVDGFPELVMAIQRVEVFYKQKQFYFYPAWAYAMLLQLDQDSSFPRRILSLDFSYLLRHWLHPSTYQHCPCLE* Homology
BLAST of CsGy6G015530.1 vs. ExPASy Swiss-Prot
Match: Q9LFH0 (ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.2e-13 Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy Swiss-Prot
Match: Q9ZUT8 (ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12 Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy Swiss-Prot
Match: Q8GU83 (ABC transporter G family member 41 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG41 PE=3 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.4e-12 Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy Swiss-Prot
Match: Q5W274 (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 9.1e-12 Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy Swiss-Prot
Match: Q2QV81 (ABC transporter G family member 49 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG49 PE=2 SV=3) HSP 1 Score: 67.8 bits (164), Expect = 7.7e-11 Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. NCBI nr
Match: XP_011652141.2 (pleiotropic drug resistance protein 3 [Cucumis sativus] >KGN59512.2 hypothetical protein Csa_002232 [Cucumis sativus]) HSP 1 Score: 99.4 bits (246), Expect = 9.64e-22 Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. NCBI nr
Match: XP_008443151.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo]) HSP 1 Score: 97.4 bits (241), Expect = 4.55e-21 Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. NCBI nr
Match: KAA0053948.1 (pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo var. makuwa] >TYK25456.1 pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 97.4 bits (241), Expect = 4.57e-21 Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. NCBI nr
Match: XP_008443150.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo]) HSP 1 Score: 97.4 bits (241), Expect = 4.57e-21 Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. NCBI nr
Match: XP_038903616.1 (pleiotropic drug resistance protein 3-like isoform X2 [Benincasa hispida]) HSP 1 Score: 92.8 bits (229), Expect = 1.91e-19 Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy TrEMBL
Match: A0A0A0LTH3 (ABC2_membrane domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G190180 PE=4 SV=1) HSP 1 Score: 104 bits (260), Expect = 4.74e-27 Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy TrEMBL
Match: A0A0A0LBH1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814320 PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 4.67e-22 Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy TrEMBL
Match: A0A1S3B7C4 (pleiotropic drug resistance protein 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486825 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 2.20e-21 Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy TrEMBL
Match: A0A5A7UFY6 (Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006020 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 2.21e-21 Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. ExPASy TrEMBL
Match: A0A1S3B6X0 (pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486825 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 2.21e-21 Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. TAIR 10
Match: AT3G53480.1 (pleiotropic drug resistance 9 ) HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14 Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. TAIR 10
Match: AT2G37280.1 (pleiotropic drug resistance 5 ) HSP 1 Score: 73.9 bits (180), Expect = 7.7e-14 Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. TAIR 10
Match: AT4G15233.1 (ABC-2 and Plant PDR ABC-type transporter family protein ) HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11 Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. TAIR 10
Match: AT4G15236.1 (ABC-2 and Plant PDR ABC-type transporter family protein ) HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11 Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0
BLAST of CsGy6G015530.1 vs. TAIR 10
Match: AT4G15233.2 (ABC-2 and Plant PDR ABC-type transporter family protein ) HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11 Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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