CsGy6G013867.1 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy6G013867.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr6: 12308805 .. 12309373 (-)
Sequence length321
RNA-Seq ExpressionCsGy6G013867.1
SyntenyCsGy6G013867.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATGAAGTATTAAATAGTGAAGTTGGAGTATTATTTATAGTATTAAGAATCAAATATGTAGTATATAATATAGAAGATTAAATGTTGAATATGGAGTATTGTGGAAGGAGTGAAATTATTTAGGAGTAAATTTATGAAATTCAAACGGAAGCATAAAGTTACATCTGATTGATTAAAAGAATTACCGTCATTTTTTATTCTGCCCCTAAAAAGGACCGTCCGTACAAGTTACCAAAGATCACAAAGATCCCGCCGAATCGAACAGCGAGTTCCCAAACGCAGAGGCCGAGCCCATTCCTTCGAAGTCGAAATCCCTCGCCGCCCTCCTGGCCGAAGCTCACGGCCTCGTGTTCCCTCTCCGTGGCGATATACAATTGCTAGATCGCTTCCATTTCCGACTACTCTCGAAGGCTTGCATTTGAAACGAGGTCAGGTTTGTCTTTTTTGTTGTTTAACGCCGCAGTTCTAATTCTGAATCTTGATTCAGAATTTCAGACTTGTTCTTGCTTCTTAGATAGGAATTTTCGAGATTTCGTACTGAGGATTTAAGATCTAAGACTTAG

mRNA sequence

ATGGAGCATGAAGTATTAAATAAATTACCGTCATTTTTTATTCTGCCCCTAAAAAGGACCGTCCGTACAAGTTACCAAAGATCACAAAGATCCCGCCGAATCGAACAGCGAGTTCCCAAACGCAGAGGCCGAGCCCATTCCTTCGAAGTCGAAATCCCTCGCCGCCCTCCTGGCCGAAGCTCACGGCCTCGTGTTCCCTCTCCGTGGCGATATACAATTGCTAGATCGCTTCCATTTCCGACTACTCTCGAAGGCTTGCATTTGAAACGAGGTCAGGAATTTTCGAGATTTCGTACTGAGGATTTAAGATCTAAGACTTAG

Coding sequence (CDS)

ATGGAGCATGAAGTATTAAATAAATTACCGTCATTTTTTATTCTGCCCCTAAAAAGGACCGTCCGTACAAGTTACCAAAGATCACAAAGATCCCGCCGAATCGAACAGCGAGTTCCCAAACGCAGAGGCCGAGCCCATTCCTTCGAAGTCGAAATCCCTCGCCGCCCTCCTGGCCGAAGCTCACGGCCTCGTGTTCCCTCTCCGTGGCGATATACAATTGCTAGATCGCTTCCATTTCCGACTACTCTCGAAGGCTTGCATTTGAAACGAGGTCAGGAATTTTCGAGATTTCGTACTGAGGATTTAAGATCTAAGACTTAG

Protein sequence

MEHEVLNKLPSFFILPLKRTVRTSYQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRSSRPRVPSPWRYTIARSLPFPTTLEGLHLKRGQEFSRFRTEDLRSKT*
Homology
[Close]
BLAST of CsGy6G013867.1 vs. NCBI nr
Match: KGN47101.1 (hypothetical protein Csa_020902 [Cucumis sativus])

HSP 1 Score: 183 bits (464), Expect = 9.90e-58
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MEHEVLNKLPSFFILPLKRTVRTSYQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRS 60
          MEHEVLNKLPSFFILPLKRTVRTSYQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRS
Sbjct: 1  MEHEVLNKLPSFFILPLKRTVRTSYQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRS 60

Query: 61 SRPRVPSPWRYTIARSLPFPTTLEGLHLKRGQ 92
          SRPRVPSPWRYTIARSLPFPTTLEGLHLKRGQ
Sbjct: 61 SRPRVPSPWRYTIARSLPFPTTLEGLHLKRGQ 92

[Close]
BLAST of CsGy6G013867.1 vs. ExPASy TrEMBL
Match: A0A0A0KH63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187940 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 4.79e-58
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MEHEVLNKLPSFFILPLKRTVRTSYQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRS 60
          MEHEVLNKLPSFFILPLKRTVRTSYQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRS
Sbjct: 1  MEHEVLNKLPSFFILPLKRTVRTSYQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRS 60

Query: 61 SRPRVPSPWRYTIARSLPFPTTLEGLHLKRGQ 92
          SRPRVPSPWRYTIARSLPFPTTLEGLHLKRGQ
Sbjct: 61 SRPRVPSPWRYTIARSLPFPTTLEGLHLKRGQ 92

The following BLAST results are available for this feature:
BLAST of CsGy6G013867.1 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy6G013867.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47101.19.90e-58100.00hypothetical protein Csa_020902 [Cucumis sativus][more]
BLAST of CsGy6G013867.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH634.79e-58100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187940 PE=4 SV=1[more]
BLAST of CsGy6G013867.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..67

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G013867CsGy6G013867gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G013867.1.exon3CsGy6G013867.1.exon3exon
CsGy6G013867.1.exon2CsGy6G013867.1.exon2exon
CsGy6G013867.1.exon1CsGy6G013867.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy6G013867.1cds.CsGy6G013867.1_3CDS
cds.CsGy6G013867.1cds.CsGy6G013867.1_2CDS
cds.CsGy6G013867.1cds.CsGy6G013867.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G013867.1CsGy6G013867.1-proteinpolypeptide