CsGy4G008285.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G008285.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 6255478 .. 6255827 (+)
Sequence length	327
RNA-Seq Expression	CsGy4G008285.1
Synteny	CsGy4G008285.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGCAACTTACGTATACAGAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAACGCCAATCGAAGGAGATCAAGAAAGTAAAGAAGAGAGTGAGATTTGTCGACACAGAACCGGTGATAACCACCATTAGTACTAGGAGGAGGAGGAGTTGGAAGATGAAACAGAGAAGAACGTGAGAATTATGGTGAAATTGAAGAAACAAGAAGCAAATCAAATGCTTTCGAGGTGCTTCAATGGTGGTGTTCTTGAATTCGGAGATGTGACTTTTGAACTCATGAGAATTCCTCCAACTCGAGTTAGTTCATCTTTGGTGACCAGTTGA

mRNA sequence

ATGAAGAAGGCAACTTACGTATACAGAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAACGCCAATCGAAGGAGATCAAGAAAGTAAAGAAGAGAGTGAGATTTGTCGACACAGAACCGGAGGAGGAGGAGTTGGAAGATGAAACAGAGAAGAACGTGAGAATTATGGTGAAATTGAAGAAACAAGAAGCAAATCAAATGCTTTCGAGGTGCTTCAATGGTGGTGTTCTTGAATTCGGAGATGTGACTTTTGAACTCATGAGAATTCCTCCAACTCGAGTTAGTTCATCTTTGGTGACCAGTTGA

Coding sequence (CDS)

ATGAAGAAGGCAACTTACGTATACAGAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAACGCCAATCGAAGGAGATCAAGAAAGTAAAGAAGAGAGTGAGATTTGTCGACACAGAACCGGAGGAGGAGGAGTTGGAAGATGAAACAGAGAAGAACGTGAGAATTATGGTGAAATTGAAGAAACAAGAAGCAAATCAAATGCTTTCGAGGTGCTTCAATGGTGGTGTTCTTGAATTCGGAGATGTGACTTTTGAACTCATGAGAATTCCTCCAACTCGAGTTAGTTCATCTTTGGTGACCAGTTGA

Protein sequence

MKKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPEEEELEDETEKNVRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS*

Homology

[Close]

BLAST of CsGy4G008285.1 vs. NCBI nr
Match: KAE8649206.1 (hypothetical protein Csa_015041 [Cucumis sativus])

HSP 1 Score: 155 bits (391), Expect = 4.17e-46
Identity = 89/117 (76.07%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP---------EEEEL 61
           KK  YVYRD+LTKKNHSPPSSSSSPQ Q +EIKKVKKRVRF DTEP         EEEEL
Sbjct: 18  KKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEEL 77

Query: 62  EDETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108
           E ETEK V RI VKL KQEAN+MLSRC NGGVLEFGDV  ELMRIPPTRV SSLV +
Sbjct: 78  EVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN 134

[Close]

BLAST of CsGy4G008285.1 vs. NCBI nr
Match: XP_011653217.1 (uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 155 bits (391), Expect = 5.35e-46
Identity = 89/117 (76.07%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP---------EEEEL 61
           KK  YVYRD+LTKKNHSPPSSSSSPQ Q +EIKKVKKRVRF DTEP         EEEEL
Sbjct: 26  KKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEEL 85

Query: 62  EDETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108
           E ETEK V RI VKL KQEAN+MLSRC NGGVLEFGDV  ELMRIPPTRV SSLV +
Sbjct: 86  EVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CsGy4G008285.1 vs. NCBI nr
Match: XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (374), Expect = 1.94e-43
Identity = 85/115 (73.91%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP-------EEEELED 61
           KK TYVYRDDLTKK HSPP SSSSPQ Q  EIKKVKKRVRF DTEP       + EE E+
Sbjct: 26  KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDREEEEE 85

Query: 62  ETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108
           ETEK V RI VKL KQEAN+MLSRC N GVLEFGDV  EL+RIPPTRVSSSLV +
Sbjct: 86  ETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CsGy4G008285.1 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 133 bits (334), Expect = 2.21e-37
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP--------EEEELE 61
           KK TYVYRDDL+KK  SPP SSS PQ    EIKKVKKRVRF DTEP        EE   E
Sbjct: 26  KKTTYVYRDDLSKKKQSPPPSSSQPQ---PEIKKVKKRVRFADTEPVIIAITDKEERSTE 85

Query: 62  DETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108
           +ETEK V RI VKL K+EAN+MLSRC +GGVLEFGDV  ELMRIP TRVSSS+V +
Sbjct: 86  EETEKKVVRITVKLTKEEANRMLSRCSDGGVLEFGDVACELMRIPATRVSSSMVAN 138

[Close]

BLAST of CsGy4G008285.1 vs. NCBI nr
Match: XP_023522331.1 (uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110 bits (276), Expect = 1.59e-28
Identity = 69/112 (61.61%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP-------EEEELED 61
           KK T VYR D++KK      S   P     EI+KVKKRVRF DTEP       EE   E+
Sbjct: 26  KKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKVKKRVRFADTEPVIIAIDREERSTEE 85

Query: 62  ETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSL 105
           ETEK V RI VKL KQEAN+MLSRC NGGVLEFGDV  ELMRIP  RVSSS+
Sbjct: 86  ETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPAARVSSSM 132

[Close]

BLAST of CsGy4G008285.1 vs. ExPASy TrEMBL
Match: A0A0A0KZ22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 206 bits (525), Expect = 3.32e-67
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MKKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPEEEELEDETEKNV 60
           MKKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPEEEELEDETEKNV
Sbjct: 1   MKKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPEEEELEDETEKNV 60

Query: 61  RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108
           RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS
Sbjct: 61  RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of CsGy4G008285.1 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 2.59e-46
Identity = 89/117 (76.07%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP---------EEEEL 61
           KK  YVYRD+LTKKNHSPPSSSSSPQ Q +EIKKVKKRVRF DTEP         EEEEL
Sbjct: 26  KKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEEL 85

Query: 62  EDETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108
           E ETEK V RI VKL KQEAN+MLSRC NGGVLEFGDV  ELMRIPPTRV SSLV +
Sbjct: 86  EVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CsGy4G008285.1 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 9.41e-44
Identity = 85/115 (73.91%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP-------EEEELED 61
           KK TYVYRDDLTKK HSPP SSSSPQ Q  EIKKVKKRVRF DTEP       + EE E+
Sbjct: 26  KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDREEEEE 85

Query: 62  ETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108
           ETEK V RI VKL KQEAN+MLSRC N GVLEFGDV  EL+RIPPTRVSSSLV +
Sbjct: 86  ETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CsGy4G008285.1 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 9.41e-44
Identity = 85/115 (73.91%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP-------EEEELED 61
           KK TYVYRDDLTKK HSPP SSSSPQ Q  EIKKVKKRVRF DTEP       + EE E+
Sbjct: 26  KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDREEEEE 85

Query: 62  ETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108
           ETEK V RI VKL KQEAN+MLSRC N GVLEFGDV  EL+RIPPTRVSSSLV +
Sbjct: 86  ETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CsGy4G008285.1 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 1.15e-28
Identity = 69/112 (61.61%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP-------EEEELED 61
           KK T VYR D++KK       S SP +   EI+KVKKRVRF DTEP       EE   E+
Sbjct: 26  KKTTNVYRRDMSKKKQ---PQSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREERSTEE 85

Query: 62  ETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSL 105
           ETEK V RI VKL KQEAN+MLSRC +GGVLEFGDV  ELMRIP  RVSSS+
Sbjct: 86  ETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVSSSM 134

The following BLAST results are available for this feature:

BLAST of CsGy4G008285.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G008285.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649206.1	4.17e-46	76.07	hypothetical protein Csa_015041 [Cucumis sativus]	[more]
XP_011653217.1	5.35e-46	76.07	uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
XP_008451951.1	1.94e-43	73.91	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc...	[more]
XP_038906331.1	2.21e-37	68.10	uncharacterized protein LOC120092170 [Benincasa hispida]	[more]
XP_023522331.1	1.59e-28	61.61	uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy4G008285.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ22	3.32e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091930 PE=4 SV=1	[more]
A0A0A0KYE1	2.59e-46	76.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]
A0A5D3D246	9.41e-44	73.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	9.41e-44	73.91	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A6J1JBA8	1.15e-28	61.61	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]

BLAST of CsGy4G008285.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 2..107
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 2..107

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G008285	CsGy4G008285	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G008285.1.exon1	CsGy4G008285.1.exon1	exon
CsGy4G008285.1.exon2	CsGy4G008285.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy4G008285.1	cds.CsGy4G008285.1	CDS
cds.CsGy4G008285.1	cds.CsGy4G008285.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G008285.1	CsGy4G008285.1-protein	polypeptide