CsGy3G044755.1 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy3G044755.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr3: 41461589 .. 41463122 (-)
Sequence length294
RNA-Seq ExpressionCsGy3G044755.1
SyntenyCsGy3G044755.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGTAAAAGTTTGGTGCAAACATCCAACTACAACATAAATATTACTATTTAGGATATGAATATATGTGGTTAACTTTTAAACCATAATCTATTTAAAATGTGACTATATTTTTTTCTTTTAATTTGATCAAAATAACAACATATATAATTTTTTTCATATTCTATCAATCAAATTTTGTCGTAATTTATAAATATTTTAATTTATTTTACTACTATTAAAAATATATATTTTTTATTATTTTAAATAATGAATTGACATTTATATATATATATATATATATATATATATATATATAATATTAAAAATTCAAATTTCCATCTCCTCTTCTCCCTTCTCTAATTCAAATACTTCAAAGCCCCTAAAACCATAATACATCTAGGCACTTCCATGATATTCGTATAAATATAATTAAAAATATATGAAAAGCTTTTCTCCTAAAAATACCTATTAACAAACAAAAAAAAACACAAAAACTCATTATACTTAATTTTGAATTTTGACATAAGTAAATAATTGGTATATTTTTGCTAATTTTGAAAATTGTATTTATTTAAAATATAATGCATGGATCCACCACAAGGGGCGTGCAGTACAGTTGCAATAAATTTCATACGTGGCCAAAATTATTTTGCGGTGAACATATATTTGTATTGTATCATCCAATTCGAAAAAGATTCTGCTTTATTACCTGGAATACCAGAAATAAAACAATTAAATTAAATTACGAAAAAAACGAAGAAGAAAAAATTAAATAAACAATATATATACCAATTAAGGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGTGAGTCTCTTTTCCCCTTTCTCTCATCTTTCCTTTACGCTTTATAGCGAATTCTCTGGATTTTTTTATGTGGGCCGTGCTTGGATTTCAATTTTATATTTGGGTTTCTTTAAAAAAAAAAAAGTTGTGTAATCTTTCTTCCGAGTCTTTCTGAAATTTGAGATAAACGGGCGAAGAATTTGTTGGATCATTTAAAACAGAGAGAAAAGAGAGAGAGAGAGAGAGGAGTGTAGATGGGTCGGTATGAATGAATACCTTGATTATTTTATTGATTACAATTGAATTTTAGATGTCTCGTGTTTGAAATACGATTTTTTTTTTTTTAAATTTTCTGAGGTCAACAAAAGGCTAAGTCAAAATGTTTTACCCAAGATTTATGTTCGGTAGTTTGGTTTTGAATTTTATGTCGACTAATCTGAGGGTGTTTTGATGGTTGTTTTGAATTTTGGGTTCGTTAAATGCAAGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

mRNA sequence

ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

Coding sequence (CDS)

ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

Protein sequence

MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSSSGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL*
Homology
[Close]
BLAST of CsGy3G044755.1 vs. NCBI nr
Match: KGN60456.1 (hypothetical protein Csa_002425 [Cucumis sativus])

HSP 1 Score: 211 bits (538), Expect = 3.18e-69
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60
          MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS
Sbjct: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60

Query: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 97
          SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL
Sbjct: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 97

[Close]
BLAST of CsGy3G044755.1 vs. ExPASy TrEMBL
Match: A0A0A0LKD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912880 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 1.54e-69
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60
          MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS
Sbjct: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60

Query: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 97
          SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL
Sbjct: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 97

The following BLAST results are available for this feature:
BLAST of CsGy3G044755.1 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy3G044755.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60456.13.18e-69100.00hypothetical protein Csa_002425 [Cucumis sativus][more]
BLAST of CsGy3G044755.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKD61.54e-69100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912880 PE=4 SV=1[more]
BLAST of CsGy3G044755.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G044755CsGy3G044755gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G044755.1.exon3CsGy3G044755.1.exon3exon
CsGy3G044755.1.exon2CsGy3G044755.1.exon2exon
CsGy3G044755.1.exon1CsGy3G044755.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy3G044755.1cds.CsGy3G044755.1_3CDS
cds.CsGy3G044755.1cds.CsGy3G044755.1_2CDS
cds.CsGy3G044755.1cds.CsGy3G044755.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G044755.1CsGy3G044755.1-proteinpolypeptide