CsGy3G024270.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G024270.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	cell wall protein DAN4-like
Location	Gy14Chr3: 24274799 .. 24275152 (+)
Sequence length	354
RNA-Seq Expression	CsGy3G024270.2
Synteny	CsGy3G024270.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCCTCCTCAGGTTCCTCTACTGGTTCTCCATCAATATCAGTGGCTCCCGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCGGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGTTTTTTTGGTTGA

mRNA sequence

ATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCCTCCTCAGGTTCCTCTACTGGTTCTCCATCAATATCAGTGGCTCCCGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCGGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGTTTTTTTGGTTGA

Coding sequence (CDS)

ATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCCTCCTCAGGTTCCTCTACTGGTTCTCCATCAATATCAGTGGCTCCCGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCGGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGTTTTTTTGGTTGA

Protein sequence

MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTTTTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG*

Homology

[Close]

BLAST of CsGy3G024270.2 vs. NCBI nr
Match: KAE8650786.1 (hypothetical protein Csa_017544 [Cucumis sativus])

HSP 1 Score: 175 bits (443), Expect = 4.08e-54
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60

Query: 61  TTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 117
           TTTTSSSSS GSSTGSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  TTTTSSSSS-GSSTGSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 116

[Close]

BLAST of CsGy3G024270.2 vs. NCBI nr
Match: XP_031737565.1 (putative protein TPRXL [Cucumis sativus] >KAE8650787.1 hypothetical protein Csa_017464 [Cucumis sativus])

HSP 1 Score: 173 bits (439), Expect = 1.71e-53
Identity = 113/117 (96.58%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60

Query: 61  TTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 117
           TTTT++SSSSGSS  SPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  TTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 117

[Close]

BLAST of CsGy3G024270.2 vs. NCBI nr
Match: KGN58213.1 (hypothetical protein Csa_017497 [Cucumis sativus])

HSP 1 Score: 126 bits (317), Expect = 5.06e-35
Identity = 94/118 (79.66%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVA+TG VAQGPTSSTPAPTTSSTPAP TSS      SSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSSTPAPTTSSTPAPMTSSS-----SSSSSLDSTTT 60

Query: 61  TTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 117
           TTTTSS    GSS  SPSIS APGL+PDS AQSPTTA SP+GS S ETSR F+NGFFG
Sbjct: 61  TTTTSS----GSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSRLFSNGFFG 109

[Close]

BLAST of CsGy3G024270.2 vs. NCBI nr
Match: KAA0056285.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.63e-23
Identity = 84/119 (70.59%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP-TSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTT 60
           MAYQSLA LALI+VAVTG VAQ P TS T +PTT       TSS DSST SSSSSLDSTT
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTM------TSSVDSST-SSSSSLDSTT 60

Query: 61  TTTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 117
           TTTTT+SS+ + S      ISVAP  +PDS AQSPTTA SPTGS S ETSRFFTNGFFG
Sbjct: 61  TTTTTTSSADASS------ISVAPAFSPDSSAQSPTTATSPTGSPSGETSRFFTNGFFG 106

[Close]

BLAST of CsGy3G024270.2 vs. NCBI nr
Match: XP_008450206.1 (PREDICTED: cell wall protein DAN4-like [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 4.38e-23
Identity = 83/116 (71.55%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFL LIIVA+TGVVAQ P++S   PT  STPA  TSSFDSST SSSSSLDSTTT
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTS---PT--STPATMTSSFDSST-SSSSSLDSTTT 60

Query: 61  TTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGF 115
            TTT++SS     T   SIS+AP  +PDS AQSPTTA SPTGS SAETSR F+NGF
Sbjct: 61  PTTTTTSS-----TDDSSISIAPAFSPDSSAQSPTTATSPTGSTSAETSRLFSNGF 105

[Close]

BLAST of CsGy3G024270.2 vs. ExPASy TrEMBL
Match: A0A0A0LB81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.33e-46
Identity = 105/117 (89.74%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSS        FDSSTPSSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSS--------FDSSTPSSSSSLDSTTT 60

Query: 61  TTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 117
           TTTT++SSSSGSS  SPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  TTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 109

[Close]

BLAST of CsGy3G024270.2 vs. ExPASy TrEMBL
Match: A0A0A0L8Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 2.45e-35
Identity = 94/118 (79.66%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVA+TG VAQGPTSSTPAPTTSSTPAP TSS      SSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSSTPAPTTSSTPAPMTSSS-----SSSSSLDSTTT 60

Query: 61  TTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 117
           TTTTSS    GSS  SPSIS APGL+PDS AQSPTTA SP+GS S ETSR F+NGFFG
Sbjct: 61  TTTTSS----GSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSRLFSNGFFG 109

[Close]

BLAST of CsGy3G024270.2 vs. ExPASy TrEMBL
Match: A0A5D3C1H7 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00200 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.89e-24
Identity = 84/119 (70.59%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP-TSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTT 60
           MAYQSLA LALI+VAVTG VAQ P TS T +PTT       TSS DSST SSSSSLDSTT
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTM------TSSVDSST-SSSSSLDSTT 60

Query: 61  TTTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 117
           TTTTT+SS+ + S      ISVAP  +PDS AQSPTTA SPTGS S ETSRFFTNGFFG
Sbjct: 61  TTTTTTSSADASS------ISVAPAFSPDSSAQSPTTATSPTGSPSGETSRFFTNGFFG 106

[Close]

BLAST of CsGy3G024270.2 vs. ExPASy TrEMBL
Match: A0A1S3BPQ2 (cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.12e-23
Identity = 83/116 (71.55%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFL LIIVA+TGVVAQ P++S   PT  STPA  TSSFDSST SSSSSLDSTTT
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTS---PT--STPATMTSSFDSST-SSSSSLDSTTT 60

Query: 61  TTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGF 115
            TTT++SS     T   SIS+AP  +PDS AQSPTTA SPTGS SAETSR F+NGF
Sbjct: 61  PTTTTTSS-----TDDSSISIAPAFSPDSSAQSPTTATSPTGSTSAETSRLFSNGF 105

[Close]

BLAST of CsGy3G024270.2 vs. ExPASy TrEMBL
Match: A0A5D3C1I1 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00260 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.08e-20
Identity = 81/118 (68.64%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTG VAQ P +S   PT  STPA  TSS      SSSSSLDSTT 
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATS---PT--STPATMTSSA-----SSSSSLDSTTI 60

Query: 61  TTTTSSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 117
            TTT SS+ + S      ISVAP  +PDS AQSPTTA SPTGS SAETSR FTNGFFG
Sbjct: 61  PTTTISSADASS------ISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 102

The following BLAST results are available for this feature:

BLAST of CsGy3G024270.2 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G024270.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650786.1	4.08e-54	99.15	hypothetical protein Csa_017544 [Cucumis sativus]	[more]
XP_031737565.1	1.71e-53	96.58	putative protein TPRXL [Cucumis sativus] >KAE8650787.1 hypothetical protein Csa_...	[more]
KGN58213.1	5.06e-35	79.66	hypothetical protein Csa_017497 [Cucumis sativus]	[more]
KAA0056285.1	1.63e-23	70.59	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall pro...	[more]
XP_008450206.1	4.38e-23	71.55	PREDICTED: cell wall protein DAN4-like [Cucumis melo]	[more]

BLAST of CsGy3G024270.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB81	1.33e-46	89.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1	[more]
A0A0A0L8Q5	2.45e-35	79.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1	[more]
A0A5D3C1H7	7.89e-24	70.59	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPQ2	2.12e-23	71.55	cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1	[more]
A0A5D3C1I1	1.08e-20	68.64	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of CsGy3G024270.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G024270	CsGy3G024270	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G024270.2.exon1	CsGy3G024270.2.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy3G024270.2	cds.CsGy3G024270.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G024270.2	CsGy3G024270.2-protein	polypeptide