CsGy3G020155.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G020155.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Gag/pol protein
Location	Gy14Chr3: 16676869 .. 16677171 (+)
Sequence length	303
RNA-Seq Expression	CsGy3G020155.1
Synteny	CsGy3G020155.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

mRNA sequence

ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

Coding sequence (CDS)

ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

Protein sequence

MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSNKEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP*

Homology

[Close]

BLAST of CsGy3G020155.1 vs. NCBI nr
Match: KGN57724.1 (hypothetical protein Csa_010778 [Cucumis sativus])

HSP 1 Score: 214 bits (546), Expect = 2.38e-70
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN
Sbjct: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60

Query: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100
           KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP
Sbjct: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100

[Close]

BLAST of CsGy3G020155.1 vs. NCBI nr
Match: KAA0060350.1 (hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK22100.1 hypothetical protein E5676_scaffold318G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 1.68e-27
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           ++NRALLGWM H +  KPFPT +EKLC KYLPT  RYP+IEMGGRVNLAGLNRLR++H N
Sbjct: 45  VMNRALLGWMGHFEGAKPFPTTMEKLCFKYLPTLARYPKIEMGGRVNLAGLNRLRTLHLN 104

Query: 61  KEGLCRQKT 69
           KE   RQ T
Sbjct: 105 KEEELRQNT 113

[Close]

BLAST of CsGy3G020155.1 vs. NCBI nr
Match: KAA0054399.1 (hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa] >TYJ96826.1 hypothetical protein E5676_scaffold2750G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 4.18e-25
Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 5   ALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSNKEGL 64
           AL GWMKH KD  PFP+ VEKLC KYLPT  +YPQI+M GRVNLAGL+R+ S+H NKE  
Sbjct: 105 ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEE 164

Query: 65  CRQKTQKQGGYELEQQDVNESPHH 88
             QKTQKQ   E E   V +SP H
Sbjct: 165 RCQKTQKQRRPESESDKVEKSPPH 188

[Close]

BLAST of CsGy3G020155.1 vs. NCBI nr
Match: KAA0063168.1 (hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.67e-17
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM-GGRVNLAGLNRLRSIHS 60
           ++N+A LGWM++PK +K FPT  +K C KYL T  RYPQ +M GG+ N+A LNR+R+++ 
Sbjct: 122 VMNKAFLGWMRNPKGSKSFPTMAKKFCQKYLSTLARYPQTDMVGGKCNMASLNRIRTLNQ 181

Query: 61  NKEGLCRQKTQ 70
           NKE  C+ K +
Sbjct: 182 NKEEECQGKVE 192

[Close]

BLAST of CsGy3G020155.1 vs. NCBI nr
Match: KAA0040817.1 (hypothetical protein E6C27_scaffold333G00350 [Cucumis melo var. makuwa] >TYK17794.1 hypothetical protein E5676_scaffold306G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 4.68e-12
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 2  INRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM-GGRVNLAGLNRLRSIHSN 61
          +  AL  WM+HPK  KPFP  +EKLC KY+P+    PQ  M  GR +LAGLNR+ + + N
Sbjct: 1  MQEALFTWMEHPKGVKPFPKTMEKLCLKYIPSLKELPQENMVEGRCSLAGLNRVITFYQN 60

Query: 62 KEGLCRQKTQKQGGYELEQQDVNE-SPHHPPLK 92
          KE     KT   G  +LE+    + SP  P LK
Sbjct: 61 KEEERCIKTL--GKKKLEEDSEGDTSPPPPSLK 91

[Close]

BLAST of CsGy3G020155.1 vs. ExPASy TrEMBL
Match: A0A0A0L9R5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1)

HSP 1 Score: 214 bits (546), Expect = 1.15e-70
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN
Sbjct: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60

Query: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100
           KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP
Sbjct: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100

[Close]

BLAST of CsGy3G020155.1 vs. ExPASy TrEMBL
Match: A0A5D3DFD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00890 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 8.13e-28
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           ++NRALLGWM H +  KPFPT +EKLC KYLPT  RYP+IEMGGRVNLAGLNRLR++H N
Sbjct: 45  VMNRALLGWMGHFEGAKPFPTTMEKLCFKYLPTLARYPKIEMGGRVNLAGLNRLRTLHLN 104

Query: 61  KEGLCRQKT 69
           KE   RQ T
Sbjct: 105 KEEELRQNT 113

[Close]

BLAST of CsGy3G020155.1 vs. ExPASy TrEMBL
Match: A0A5A7ULS0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00200 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 2.02e-25
Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 5   ALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSNKEGL 64
           AL GWMKH KD  PFP+ VEKLC KYLPT  +YPQI+M GRVNLAGL+R+ S+H NKE  
Sbjct: 105 ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEE 164

Query: 65  CRQKTQKQGGYELEQQDVNESPHH 88
             QKTQKQ   E E   V +SP H
Sbjct: 165 RCQKTQKQRRPESESDKVEKSPPH 188

[Close]

BLAST of CsGy3G020155.1 vs. ExPASy TrEMBL
Match: A0A5A7V6C0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00540 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.26e-17
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM-GGRVNLAGLNRLRSIHS 60
           ++N+A LGWM++PK +K FPT  +K C KYL T  RYPQ +M GG+ N+A LNR+R+++ 
Sbjct: 122 VMNKAFLGWMRNPKGSKSFPTMAKKFCQKYLSTLARYPQTDMVGGKCNMASLNRIRTLNQ 181

Query: 61  NKEGLCRQKTQ 70
           NKE  C+ K +
Sbjct: 182 NKEEECQGKVE 192

[Close]

BLAST of CsGy3G020155.1 vs. ExPASy TrEMBL
Match: A0A5A7TGV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00400 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.27e-12
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 2  INRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM-GGRVNLAGLNRLRSIHSN 61
          +  AL  WM+HPK  KPFP  +EKLC KY+P+    PQ  M  GR +LAGLNR+ + + N
Sbjct: 1  MQEALFTWMEHPKGVKPFPKTMEKLCLKYIPSLKELPQENMVEGRCSLAGLNRVITFYQN 60

Query: 62 KEGLCRQKTQKQGGYELEQQDVNE-SPHHPPLK 92
          KE     KT   G  +LE+    + SP  P LK
Sbjct: 61 KEEERCIKTL--GKKKLEEDSEGDTSPPPPSLK 91

The following BLAST results are available for this feature:

BLAST of CsGy3G020155.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G020155.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57724.1	2.38e-70	100.00	hypothetical protein Csa_010778 [Cucumis sativus]	[more]
KAA0060350.1	1.68e-27	71.01	hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK2210...	[more]
KAA0054399.1	4.18e-25	63.10	hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa] >TYJ9682...	[more]
KAA0063168.1	4.67e-17	50.70	hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa]	[more]
KAA0040817.1	4.68e-12	45.16	hypothetical protein E6C27_scaffold333G00350 [Cucumis melo var. makuwa] >TYK1779...	[more]

BLAST of CsGy3G020155.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9R5	1.15e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1	[more]
A0A5D3DFD3	8.13e-28	71.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7ULS0	2.02e-25	63.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V6C0	2.26e-17	50.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TGV6	2.27e-12	45.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy3G020155.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G020155	CsGy3G020155	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G020155.1.exon1	CsGy3G020155.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy3G020155.1	cds.CsGy3G020155.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G020155.1	CsGy3G020155.1-protein	polypeptide