CsGy2G004655.1 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy2G004655.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr2: 3217603 .. 3217997 (-)
Sequence length294
RNA-Seq ExpressionCsGy2G004655.1
SyntenyCsGy2G004655.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGCCATTCCAGTTCAGATACCGCTCACTGTGCTTGATTCTGGAAGTGTCAAGCAACATCCTTTGTGGTCTTAACGTCAAGTTACTACACACCCAAGGAGAAAAGTTTCTGCTAAATTTGCAGGTCGTTAATCTGTTAAAGATTTTTTCTTTCTTTCTTTTTGGTAGATACCTCTCATGTGTTTTCCTGCAATATTTTTGCTTTCCCTTGGGGCCAATGTGTAGCAACTACCAAATAGTCTTTGTAAAGAGTCTGTTTTTCCTCGTTTTATCTTTGTTTCAGATCTGCAAGTTGTAATTGTTGTTAACTTACAATCAATTAGAAAGGGAAAGATTTTTCTTCGCAATAAACTTCTTAAAGAATACAGGTTCCTACATCCAGTAGCCTAA

mRNA sequence

ATGGCAAAGCCATTCCAGTTCAGATACCGCTCACTGTGCTTGATTCTGGAAGTGTCAAGCAACATCCTTTGTGGTCTTAACGTCAAGTTACTACACACCCAAGGAGAAAAGTTTCTGCTAAATTTGCAGCAACTACCAAATAGTCTTTGTAAAGAGTCTGTTTTTCCTCGTTTTATCTTTGTTTCAGATCTGCAAGTTGTAATTGTTGTTAACTTACAATCAATTAGAAAGGGAAAGATTTTTCTTCGCAATAAACTTCTTAAAGAATACAGGTTCCTACATCCAGTAGCCTAA

Coding sequence (CDS)

ATGGCAAAGCCATTCCAGTTCAGATACCGCTCACTGTGCTTGATTCTGGAAGTGTCAAGCAACATCCTTTGTGGTCTTAACGTCAAGTTACTACACACCCAAGGAGAAAAGTTTCTGCTAAATTTGCAGCAACTACCAAATAGTCTTTGTAAAGAGTCTGTTTTTCCTCGTTTTATCTTTGTTTCAGATCTGCAAGTTGTAATTGTTGTTAACTTACAATCAATTAGAAAGGGAAAGATTTTTCTTCGCAATAAACTTCTTAAAGAATACAGGTTCCTACATCCAGTAGCCTAA

Protein sequence

MAKPFQFRYRSLCLILEVSSNILCGLNVKLLHTQGEKFLLNLQQLPNSLCKESVFPRFIFVSDLQVVIVVNLQSIRKGKIFLRNKLLKEYRFLHPVA*
Homology
[Close]
BLAST of CsGy2G004655.1 vs. NCBI nr
Match: KGN60979.1 (hypothetical protein Csa_021263 [Cucumis sativus])

HSP 1 Score: 187 bits (475), Expect = 1.31e-59
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MAKPFQFRYRSLCLILEVSSNILCGLNVKLLHTQGEKFLLNLQQLPNSLCKESVFPRFIF 60
          MAKPFQFRYRSLCLILEVSSNILCGLNVKLLHTQGEKFLLNLQQLPNSLCKESVFPRFIF
Sbjct: 1  MAKPFQFRYRSLCLILEVSSNILCGLNVKLLHTQGEKFLLNLQQLPNSLCKESVFPRFIF 60

Query: 61 VSDLQVVIVVNLQSIRKGKIFLRNKLLKEYRFLHPVA 97
          VSDLQVVIVVNLQSIRKGKIFLRNKLLKEY FLHPVA
Sbjct: 61 VSDLQVVIVVNLQSIRKGKIFLRNKLLKEYGFLHPVA 97

[Close]
BLAST of CsGy2G004655.1 vs. ExPASy TrEMBL
Match: A0A0A0LIY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G033340 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 6.32e-60
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MAKPFQFRYRSLCLILEVSSNILCGLNVKLLHTQGEKFLLNLQQLPNSLCKESVFPRFIF 60
          MAKPFQFRYRSLCLILEVSSNILCGLNVKLLHTQGEKFLLNLQQLPNSLCKESVFPRFIF
Sbjct: 1  MAKPFQFRYRSLCLILEVSSNILCGLNVKLLHTQGEKFLLNLQQLPNSLCKESVFPRFIF 60

Query: 61 VSDLQVVIVVNLQSIRKGKIFLRNKLLKEYRFLHPVA 97
          VSDLQVVIVVNLQSIRKGKIFLRNKLLKEY FLHPVA
Sbjct: 61 VSDLQVVIVVNLQSIRKGKIFLRNKLLKEYGFLHPVA 97

The following BLAST results are available for this feature:
BLAST of CsGy2G004655.1 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy2G004655.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60979.11.31e-5998.97hypothetical protein Csa_021263 [Cucumis sativus][more]
BLAST of CsGy2G004655.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIY06.32e-6098.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G033340 PE=4 SV=1[more]
BLAST of CsGy2G004655.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G004655CsGy2G004655gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G004655.1.exon2CsGy2G004655.1.exon2exon
CsGy2G004655.1.exon1CsGy2G004655.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy2G004655.1cds.CsGy2G004655.1_2CDS
cds.CsGy2G004655.1cds.CsGy2G004655.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G004655.1CsGy2G004655.1-proteinpolypeptide